Factsheet for GSMUA_Achr2P12960_001

Subcellular Localization

min:

: max

Winner_takes_all: vacuole

Predictor Summary:

extracellular 2
endoplasmic reticulum 2
vacuole 4
plasma membrane 2
golgi 2
plastid 2
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	vacuole
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	secretory
EpiLoc:	plastid
iPSORT:	mitochondrion
MultiLoc:	vacuole
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	vacuole

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr1P21300_001
GSMUA_Achr4P00500_001
GSMUA_Achr5P05900_001
GSMUA_Achr6P02720_001
GSMUA_Achr7P04940_001
GSMUA_Achr7P12530_001
GSMUA_Achr7P17990_001
GSMUA_Achr7P19630_001
GSMUA_Achr7P20990_001
GSMUA_Achr8P14440_001
GSMUA_Achr8P18250_001
GSMUA_Achr9P00810_001
GSMUA_Achr9P15630_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G30120.1	GSMUA_Achr10P...	AT1G14920.1	21798944
AT1G30120.1	GSMUA_Achr1P21300_001	AT1G14920.1	21798944
AT1G30120.1	GSMUA_Achr8P18250_001	AT1G14920.1	21798944
AT1G30120.1	GSMUA_Achr8P14440_001	AT1G70340.1	21798944
AT1G30120.1	GSMUA_Achr9P00810_001	AT1G70340.1	21798944
AT1G30120.1	GSMUA_Achr5P05900_001	AT3G17860.1	21798944
AT1G30120.1	GSMUA_Achr7P12530_001	AT3G17860.1	21798944
AT1G30120.1	GSMUA_Achr9P15630_001	AT3G17860.1	21798944
AT1G30120.1	GSMUA_Achr7P04940_001	AT3G21140.1	21798944
AT1G30120.1	GSMUA_Achr7P19630_001	AT3G21140.1	21798944
AT1G30120.1	GSMUA_AchrUn_...	AT3G21140.1	21798944
AT1G30120.1	GSMUA_Achr4P00500_001	AT3G47620.1	21798944
AT1G30120.1	GSMUA_Achr6P02720_001	AT3G47620.1	21798944
AT1G30120.1	GSMUA_Achr7P17990_001	AT3G47620.1	21798944
AT1G30120.1	GSMUA_Achr7P20990_001	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY54115	Canola	mitochondrion, peroxisome, plastid	66.13	67.21
GSMUA_Achr4P31470_001	Banana	mitochondrion	79.03	18.77
Bra032361.1-P	Field mustard	cytosol, mitochondrion, peroxisome	70.97	14.33
Zm00001d000227_P001	Maize	cytosol	72.58	14.11
Os03t0645100-01	Rice	plastid	70.97	13.46
GSMUA_Achr5P02560_001	Banana	plastid	75.81	12.67
CDX90227	Canola	cytosol, mitochondrion, peroxisome	37.1	12.37
Zm00001d033225_P002	Maize	plastid	72.58	11.75
EER93752	Sorghum	plastid	72.58	11.63
VIT_10s0003g03770.t01	Wine grape	plastid	72.58	11.51
Os12t0616900-01	Rice	plastid	72.58	11.51
TraesCS5D01G384100.1	Wheat	golgi	72.58	11.45
TraesCS5B01G376400.1	Wheat	plastid	72.58	11.45
TraesCS5A01G374500.1	Wheat	plastid	72.58	11.45
EES16391	Sorghum	plastid	72.58	11.28
KRH58644	Soybean	nucleus	72.58	11.11
KRH42550	Soybean	plastid	72.58	11.08
KRH05520	Soybean	plastid	70.97	10.92
CDY63670	Canola	plastid	70.97	10.92
Bra010796.1-P	Field mustard	plastid	70.97	10.92
VIT_04s0043g00720.t01	Wine grape	plastid	70.97	10.86
KRH15497	Soybean	plastid	70.97	10.86
AT2G34590.1	Thale cress	plastid	70.97	10.84
AT1G30120.1	Thale cress	plastid	70.97	10.84
Solyc04g008590.2.1	Tomato	plastid	70.97	10.78
Solyc08g016750.2.1	Tomato	plastid	69.35	10.54
TraesCS5A01G030800.1	Wheat	plastid	66.13	10.49
TraesCS5B01G030400.1	Wheat	plastid	66.13	10.43
HORVU0Hr1G009910.2	Barley	plastid	66.13	10.41
PGSC0003DMT400080554	Potato	plastid	72.58	10.32
PGSC0003DMT400019358	Potato	plastid	69.35	10.31
TraesCS5D01G039000.1	Wheat	plastid	66.13	10.12
HORVU5Hr1G092920.4	Barley	plastid	72.58	9.68
CDY26291	Canola	plastid	37.1	7.3
CDY51472	Canola	plastid	37.1	6.3
GSMUA_Achr5P25000_001	Banana	mitochondrion, plastid	27.42	4.11
GSMUA_Achr8P20340_001	Banana	mitochondrion	11.29	1.87
GSMUA_Achr8P09180_001	Banana	extracellular, mitochondrion, peroxisome	1.61	0.46
CDY54117	Canola	cytosol	0.0	0.0
CDY54116	Canola	cytosol	0.0	0.0
CDX90228	Canola	plastid	0.0	0.0

Protein Annotations

EnsemblPlants:GSMUA_Achr2P12960_001	EnsemblPlants:GSMUA_Achr2T12960_001	EnsemblPlantsGene:GSMUA_Achr2G12960_001	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150
GO:GO:0008152	InterPro:IPR009014	InterPro:Transketo_C/PFOR_II	PANTHER:PTHR11624	PANTHER:PTHR11624:SF95	SUPFAM:SSF52922
UniParc:UPI00029636E9	UniProt:M0S7I7	MapMan:35.1	:	:	:

Description

Pyruvate dehydrogenase E1 component subunit beta [Source:GMGC_GENE;Acc:GSMUA_Achr2G12960_001]

Coordinates

chr2:-:15256903..15257091

Molecular Weight (calculated)

6801.3 Da

IEP (calculated)

4.539

GRAVY (calculated)

0.506

Length

62 amino acids

Sequence
(BLAST)

1: MRTGGISANL RSAVIGNFWD YLDVPIICLS SQVVLTPYAG TLNEWIMVQP AQIVPAVEQL CH

Best Arabidopsis Sequence Match ( AT1G30120.1 )
(BLAST)

001: MSSIIHGAGA ATTTLSTFNS VDSKKLFVAP SRTNLSVRSQ RYIVAGSDAS KKSFGSGLRV RHSQKLIPNA VATKEADTSA STGHELLLFE ALQEGLEEEM
101: DRDPHVCVMG EDVGHYGGSY KVTKGLADKF GDLRVLDTPI CENAFTGMGI GAAMTGLRPV IEGMNMGFLL LAFNQISNNC GMLHYTSGGQ FTIPVVIRGP
201: GGVGRQLGAE HSQRLESYFQ SIPGIQMVAC STPYNAKGLM KAAIRSENPV ILFEHVLLYN LKEKIPDEDY VCNLEEAEMV RPGEHITILT YSRMRYHVMQ
301: AAKTLVNKGY DPEVIDIRSL KPFDLHTIGN SVKKTHRVLI VEECMRTGGI GASLTAAINE NFHDYLDAPV MCLSSQDVPT PYAGTLEEWT VVQPAQIVTA
401: VEQLCQ

Arabidopsis Description

PDH-E1 BETAPyruvate dehydrogenase E1 component subunit beta-2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C6Z3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.