Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr8P18250_001 | Banana | cytosol | 57.17 | 61.59 |
| GSMUA_Achr10P... | Banana | cytosol | 54.07 | 58.37 |
| Os03t0707600-01 | Rice | nucleus | 63.57 | 52.48 |
| TraesCS4A01G271000.1 | Wheat | cytosol | 62.98 | 52.42 |
| TraesCS4B01G043100.1 | Wheat | cytosol | 62.98 | 52.33 |
| TraesCS4D01G040400.1 | Wheat | cytosol | 63.18 | 52.33 |
| HORVU4Hr1G006930.1 | Barley | nucleus | 62.4 | 52.1 |
| Zm00001d013465_P001 | Maize | cytosol | 62.21 | 51.36 |
| Zm00001d033680_P001 | Maize | nucleus | 62.21 | 50.95 |
| EER93592 | Sorghum | cytosol | 61.43 | 50.56 |
| KRH42544 | Soybean | cytosol, nucleus, plastid | 50.19 | 50.1 |
| KRH58636 | Soybean | nucleus | 50.19 | 49.52 |
| AT1G14920.1 | Thale cress | nucleus | 50.78 | 49.16 |
| TraesCS4A01G466700.1 | Wheat | cytosol, nucleus, peroxisome | 30.23 | 47.85 |
| VIT_01s0011g05260.t01 | Wine grape | cytosol | 53.68 | 46.95 |
| CDY36236 | Canola | cytosol, nucleus, plastid | 50.58 | 46.94 |
| Bra024875.1-P | Field mustard | nucleus | 50.78 | 45.72 |
| CDY17662 | Canola | cytosol, nucleus, plastid | 50.58 | 45.63 |
| AT2G01570.1 | Thale cress | mitochondrion, nucleus | 51.16 | 44.97 |
| CDY04092 | Canola | cytosol | 44.96 | 43.45 |
| CDY64837 | Canola | cytosol | 44.77 | 42.62 |
| Bra017443.1-P | Field mustard | cytosol | 44.77 | 42.23 |
| GSMUA_Achr6P34550_001 | Banana | mitochondrion, nucleus, peroxisome, plastid | 37.02 | 31.26 |
| GSMUA_Achr1P16230_001 | Banana | cytosol | 17.83 | 25.84 |
| GSMUA_Achr8P09690_001 | Banana | cytosol | 21.12 | 24.44 |
| GSMUA_Achr6P17870_001 | Banana | cytosol | 19.96 | 23.09 |
| GSMUA_Achr7P16880_001 | Banana | cytosol | 16.47 | 22.43 |
| GSMUA_Achr11P... | Banana | cytosol, nucleus, peroxisome, plastid | 20.16 | 21.99 |
| GSMUA_Achr10P... | Banana | nucleus | 18.41 | 21.64 |
| GSMUA_Achr11P... | Banana | plastid | 24.03 | 21.6 |
| GSMUA_Achr8P01180_001 | Banana | nucleus | 18.8 | 21.23 |
| GSMUA_AchrUn_... | Banana | cytosol | 15.7 | 21.2 |
| GSMUA_Achr1P09360_001 | Banana | cytosol | 15.12 | 21.14 |
| GSMUA_AchrUn_... | Banana | cytosol | 21.71 | 20.93 |
| GSMUA_Achr4P23590_001 | Banana | cytosol, mitochondrion, nucleus, plastid | 12.4 | 20.78 |
| GSMUA_Achr1P19470_001 | Banana | nucleus | 14.92 | 20.1 |
| GSMUA_Achr6P20830_001 | Banana | nucleus | 23.64 | 20.0 |
| GSMUA_Achr1P18840_001 | Banana | cytosol | 22.87 | 19.22 |
| GSMUA_Achr7P05850_001 | Banana | mitochondrion | 24.03 | 19.08 |
| GSMUA_Achr8P09400_001 | Banana | cytosol | 24.42 | 18.75 |
| GSMUA_Achr3P30530_001 | Banana | cytosol | 20.93 | 18.72 |
| GSMUA_Achr5P21440_001 | Banana | nucleus, plastid | 25.19 | 18.39 |
| GSMUA_Achr4P07320_001 | Banana | cytosol | 19.96 | 18.36 |
| GSMUA_Achr4P19750_001 | Banana | cytosol, mitochondrion, nucleus, plastid | 23.26 | 13.92 |
| GSMUA_Achr11P... | Banana | cytosol | 21.71 | 10.16 |
Protein Annotations
| Gene3D:1.10.10.1290 | MapMan:11.6.2.2 | MapMan:15.5.12 | InterPro:DELLA_N_sf | GO:GO:0000989 | GO:GO:0003674 |
| GO:GO:0003712 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| EnsemblPlantsGene:GSMUA_Achr1G21300_001 | EnsemblPlants:GSMUA_Achr1P21300_001 | EnsemblPlants:GSMUA_Achr1T21300_001 | InterPro:IPR005202 | InterPro:IPR038088 | UniProt:M0S1T8 |
| PFAM:PF03514 | PFAM:PF12041 | PFscan:PS50985 | PANTHER:PTHR31636 | PANTHER:PTHR31636:SF47 | SMART:SM01129 |
| InterPro:TF_DELLA | InterPro:TF_DELLA_N | InterPro:TF_GRAS | UniParc:UPI000294F2D1 | SEG:seg | : |
Description
DELLA protein DWARF8 [Source:GMGC_GENE;Acc:GSMUA_Achr1G21300_001]
Coordinates
chr1:-:16037744..16040030
Molecular Weight (calculated)
54553.8 Da
IEP (calculated)
6.903
GRAVY (calculated)
-0.241
Length
516 amino acids
Sequence
(BLAST)
(BLAST)
001: MKREHQETGA GGGSGYHVAT AADMAGAKGK MTAASSMGME DDDCGVDELL AALGYKVRSS DMADVAQKLE QLEMAMASTA AAASDDASVL PQIASDTVHY
101: DPSHLAAWLD SMLSELNAPP PPLPPPPPPP AITTVAPLRP SDAYGFKPKR KRTCSPSSSS SWGAEAGRAR GSRTEGASSA KPAAALPVVV VDTQETGIRL
201: VHALMACAEA VQQENLKAAD ALVKHISVLA ASQDGPMRKV AGYFAEAIAR RIYRRRPLSQ VDRALDSPAL EDLLHLHFYE SCPYLKFAHF TANQAILEAF
301: SGCRRVHVID FGMRQGLQWP ALLQALALRP GGPPSLRLTG IGPPQSDHSD ALQQVGWKLD MLAKTIGVDF RYRGFVASSL ADLESRMLLE RDGKGAQDGA
401: GGAAADRDGG GGGGEPQRGH VPGSVHGGAA LLLEHGAERT ERHETLGQWR VRMARAGFEP AHLGSNAFKQ ASMLLALYAG GDGFRVEETD GCLTLGWHTR
501: PLIATSAWRV SAASAH
101: DPSHLAAWLD SMLSELNAPP PPLPPPPPPP AITTVAPLRP SDAYGFKPKR KRTCSPSSSS SWGAEAGRAR GSRTEGASSA KPAAALPVVV VDTQETGIRL
201: VHALMACAEA VQQENLKAAD ALVKHISVLA ASQDGPMRKV AGYFAEAIAR RIYRRRPLSQ VDRALDSPAL EDLLHLHFYE SCPYLKFAHF TANQAILEAF
301: SGCRRVHVID FGMRQGLQWP ALLQALALRP GGPPSLRLTG IGPPQSDHSD ALQQVGWKLD MLAKTIGVDF RYRGFVASSL ADLESRMLLE RDGKGAQDGA
401: GGAAADRDGG GGGGEPQRGH VPGSVHGGAA LLLEHGAERT ERHETLGQWR VRMARAGFEP AHLGSNAFKQ ASMLLALYAG GDGFRVEETD GCLTLGWHTR
501: PLIATSAWRV SAASAH
001: MKRDHHQFQG RLSNHGTSSS SSSISKDKMM MVKKEEDGGG NMDDELLAVL GYKVRSSEMA EVALKLEQLE TMMSNVQEDG LSHLATDTVH YNPSELYSWL
101: DNMLSELNPP PLPASSNGLD PVLPSPEICG FPASDYDLKV IPGNAIYQFP AIDSSSSSNN QNKRLKSCSS PDSMVTSTST GTQIGGVIGT TVTTTTTTTT
201: AAGESTRSVI LVDSQENGVR LVHALMACAE AIQQNNLTLA EALVKQIGCL AVSQAGAMRK VATYFAEALA RRIYRLSPPQ NQIDHCLSDT LQMHFYETCP
301: YLKFAHFTAN QAILEAFEGK KRVHVIDFSM NQGLQWPALM QALALREGGP PTFRLTGIGP PAPDNSDHLH EVGCKLAQLA EAIHVEFEYR GFVANSLADL
401: DASMLELRPS DTEAVAVNSV FELHKLLGRP GGIEKVLGVV KQIKPVIFTV VEQESNHNGP VFLDRFTESL HYYSTLFDSL EGVPNSQDKV MSEVYLGKQI
501: CNLVACEGPD RVERHETLSQ WGNRFGSSGL APAHLGSNAF KQASMLLSVF NSGQGYRVEE SNGCLMLGWH TRPLITTSAW KLSTAAY
101: DNMLSELNPP PLPASSNGLD PVLPSPEICG FPASDYDLKV IPGNAIYQFP AIDSSSSSNN QNKRLKSCSS PDSMVTSTST GTQIGGVIGT TVTTTTTTTT
201: AAGESTRSVI LVDSQENGVR LVHALMACAE AIQQNNLTLA EALVKQIGCL AVSQAGAMRK VATYFAEALA RRIYRLSPPQ NQIDHCLSDT LQMHFYETCP
301: YLKFAHFTAN QAILEAFEGK KRVHVIDFSM NQGLQWPALM QALALREGGP PTFRLTGIGP PAPDNSDHLH EVGCKLAQLA EAIHVEFEYR GFVANSLADL
401: DASMLELRPS DTEAVAVNSV FELHKLLGRP GGIEKVLGVV KQIKPVIFTV VEQESNHNGP VFLDRFTESL HYYSTLFDSL EGVPNSQDKV MSEVYLGKQI
501: CNLVACEGPD RVERHETLSQ WGNRFGSSGL APAHLGSNAF KQASMLLSVF NSGQGYRVEE SNGCLMLGWH TRPLITTSAW KLSTAAY
Arabidopsis Description
RGADELLA protein RGA [Source:UniProtKB/Swiss-Prot;Acc:Q9SLH3]
SUBAcon: [mitochondrion,nucleus]
SUBAcon: [mitochondrion,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.