Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 3
- cytosol 2
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr10P... | |
| GSMUA_Achr6P09070_001 | |
| GSMUA_Achr6P22070_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G50420.1 | GSMUA_Achr10P... | AT4G22220.1 | 21798944 |
| AT1G50420.1 | GSMUA_Achr6P09070_001 | AT4G22220.1 | 21798944 |
| AT1G50420.1 | GSMUA_Achr6P22070_001 | AT4G22220.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr11P... | Banana | cytosol, nucleus, peroxisome, plastid | 88.34 | 83.3 |
| HORVU3Hr1G106260.1 | Barley | cytosol | 28.03 | 69.83 |
| Os01t0948200-00 | Rice | cytosol | 65.47 | 66.06 |
| TraesCS3A01G487500.1 | Wheat | cytosol, plastid | 64.57 | 64.43 |
| TraesCS3D01G482600.1 | Wheat | cytosol | 64.8 | 63.52 |
| TraesCS3B01G535100.1 | Wheat | cytosol | 64.35 | 63.36 |
| Zm00001d042127_P001 | Maize | plastid | 63.45 | 63.31 |
| Zm00001d011881_P001 | Maize | cytosol | 62.78 | 62.36 |
| CDY68881 | Canola | cytosol | 34.08 | 62.3 |
| CDY45059 | Canola | cytosol | 42.15 | 61.84 |
| EES02045 | Sorghum | cytosol, plastid | 62.78 | 61.0 |
| VIT_13s0019g01220.t01 | Wine grape | cytosol | 65.25 | 60.88 |
| PGSC0003DMT400011839 | Potato | cytosol | 63.23 | 60.26 |
| Solyc12g099900.1.1 | Tomato | nucleus | 62.78 | 59.83 |
| Bra014251.1-P | Field mustard | cytosol | 59.42 | 59.55 |
| Bra018848.1-P | Field mustard | cytosol | 58.07 | 58.86 |
| VIT_06s0009g02390.t01 | Wine grape | cytosol | 62.56 | 58.86 |
| CDY03601 | Canola | cytosol | 58.97 | 58.57 |
| KRH29080 | Soybean | cytosol | 59.42 | 58.24 |
| CDY22795 | Canola | cytosol, plastid | 56.95 | 57.21 |
| PGSC0003DMT400058477 | Potato | cytosol | 60.54 | 57.2 |
| KRH24106 | Soybean | cytosol, nucleus, peroxisome | 58.3 | 57.14 |
| Solyc01g008910.2.1 | Tomato | cytosol | 60.09 | 56.3 |
| KRH77666 | Soybean | endoplasmic reticulum, nucleus, peroxisome, plastid | 58.52 | 56.13 |
| KRH27822 | Soybean | nucleus, plastid | 59.19 | 55.81 |
| AT1G50420.1 | Thale cress | cytosol | 60.31 | 55.81 |
| Os06t0211500-00 | Rice | cytosol | 21.08 | 49.21 |
| KRH29971 | Soybean | cytosol | 47.31 | 47.74 |
| KRH62871 | Soybean | cytosol | 47.31 | 47.63 |
| HORVU2Hr1G113480.1 | Barley | cytosol | 28.92 | 40.95 |
| HORVU2Hr1G113490.1 | Barley | cytosol | 28.92 | 40.95 |
| TraesCS2D01G534700.1 | Wheat | cytosol | 28.7 | 40.76 |
| Os12t0138100-00 | Rice | cytosol | 44.84 | 40.65 |
| Os11t0141500-00 | Rice | cytosol | 44.62 | 40.45 |
| TraesCS6D01G055100.1 | Wheat | cytosol | 27.8 | 39.49 |
| Zm00001d023248_P001 | Maize | cytosol | 43.95 | 38.74 |
| TraesCS4B01G133000.1 | Wheat | cytosol, nucleus, plastid | 12.56 | 38.36 |
| TraesCS2A01G532900.1 | Wheat | cytosol | 36.32 | 37.67 |
| TraesCS2D01G055700.1 | Wheat | extracellular, golgi, mitochondrion, plastid | 26.01 | 37.18 |
| TraesCS5B01G133800.1 | Wheat | mitochondrion | 45.96 | 37.14 |
| TraesCS5A01G135000.1 | Wheat | mitochondrion | 45.96 | 36.94 |
| HORVU5Hr1G043310.1 | Barley | cytosol | 45.29 | 36.73 |
| TraesCS5D01G139500.1 | Wheat | mitochondrion | 45.74 | 36.49 |
| EES16518 | Sorghum | cytosol | 36.55 | 36.22 |
| GSMUA_Achr1P16230_001 | Banana | cytosol | 27.35 | 34.27 |
| EES09233 | Sorghum | cytosol | 37.22 | 34.09 |
| TraesCS2B01G562400.1 | Wheat | cytosol | 36.1 | 33.97 |
| GSMUA_Achr1P09360_001 | Banana | cytosol | 28.03 | 33.88 |
| OQU77884 | Sorghum | plasma membrane | 34.53 | 33.85 |
| KXG22822 | Sorghum | mitochondrion | 43.05 | 33.28 |
| HORVU2Hr1G113360.1 | Barley | cytosol | 35.43 | 33.26 |
| HORVU4Hr1G026010.3 | Barley | cytosol | 33.18 | 33.18 |
| Os11t0141700-00 | Rice | cytosol | 37.44 | 33.0 |
| GSMUA_AchrUn_... | Banana | cytosol | 28.25 | 32.98 |
| Os12t0138200-00 | Rice | cytosol | 37.67 | 32.94 |
| TraesCS4A01G185900.1 | Wheat | cytosol | 32.74 | 32.74 |
| Zm00001d037901_P001 | Maize | cytosol, peroxisome, plastid | 33.63 | 32.47 |
| GSMUA_Achr1P19470_001 | Banana | nucleus | 27.58 | 32.11 |
| TraesCSU01G014000.1 | Wheat | cytosol | 21.08 | 31.97 |
| GSMUA_Achr7P16880_001 | Banana | cytosol | 26.91 | 31.66 |
| Zm00001d052464_P001 | Maize | cytosol, plasma membrane, plastid | 34.3 | 31.42 |
| TraesCS4D01G127800.2 | Wheat | mitochondrion | 33.18 | 31.16 |
| GSMUA_Achr11P... | Banana | cytosol | 76.91 | 31.13 |
| OQU77885 | Sorghum | cytosol | 33.63 | 31.12 |
| Zm00001d052463_P001 | Maize | cytosol | 36.1 | 30.78 |
| GSMUA_Achr4P23590_001 | Banana | cytosol, mitochondrion, nucleus, plastid | 20.63 | 29.87 |
| GSMUA_Achr8P01180_001 | Banana | nucleus | 27.58 | 26.91 |
| GSMUA_Achr6P17870_001 | Banana | cytosol | 26.91 | 26.91 |
| CDY37137 | Canola | plastid | 57.17 | 26.73 |
| Os05t0378200-00 | Rice | cytosol | 32.96 | 26.68 |
| Zm00001d023247_P001 | Maize | plastid | 33.41 | 26.61 |
| GSMUA_Achr10P... | Banana | cytosol | 28.03 | 26.15 |
| GSMUA_Achr8P18250_001 | Banana | cytosol | 28.03 | 26.1 |
| Os05t0378500-00 | Rice | plastid | 32.06 | 25.54 |
| GSMUA_Achr10P... | Banana | nucleus | 25.11 | 25.51 |
| GSMUA_Achr11P... | Banana | plastid | 30.49 | 23.69 |
| GSMUA_Achr6P20830_001 | Banana | nucleus | 32.29 | 23.61 |
| GSMUA_AchrUn_... | Banana | cytosol | 27.8 | 23.18 |
| GSMUA_Achr6P34550_001 | Banana | mitochondrion, nucleus, peroxisome, plastid | 30.72 | 22.42 |
| GSMUA_Achr3P30530_001 | Banana | cytosol | 28.7 | 22.18 |
| GSMUA_Achr8P09400_001 | Banana | cytosol | 32.51 | 21.58 |
| GSMUA_Achr4P07320_001 | Banana | cytosol | 26.68 | 21.21 |
| GSMUA_Achr1P21300_001 | Banana | nucleus | 24.44 | 21.12 |
| GSMUA_Achr7P05850_001 | Banana | mitochondrion | 30.72 | 21.08 |
| GSMUA_Achr1P18840_001 | Banana | cytosol | 28.7 | 20.85 |
| GSMUA_Achr5P21440_001 | Banana | nucleus, plastid | 31.17 | 19.66 |
| GSMUA_Achr4P19750_001 | Banana | cytosol, mitochondrion, nucleus, plastid | 30.94 | 16.01 |
| Os12t0138166-00 | Rice | endoplasmic reticulum, extracellular | 1.79 | 2.27 |
| Os11t0141550-01 | Rice | cytosol | 0.22 | 0.78 |
Protein Annotations
| MapMan:15.5.12 | GO:GO:0000989 | GO:GO:0003674 | GO:GO:0003712 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSMUA_Achr8G09690_001 | EnsemblPlants:GSMUA_Achr8P09690_001 | EnsemblPlants:GSMUA_Achr8T09690_001 |
| InterPro:IPR005202 | UniProt:M0TP22 | PFAM:PF03514 | PFscan:PS50985 | PANTHER:PTHR31636 | PANTHER:PTHR31636:SF13 |
| InterPro:Scarecrow-like_3 | InterPro:TF_GRAS | UniParc:UPI000294F1DB | SEG:seg | : | : |
Description
Scarecrow-like protein 3 [Source:GMGC_GENE;Acc:GSMUA_Achr8G09690_001]
Coordinates
chr8:+:6820936..6822348
Molecular Weight (calculated)
49777.8 Da
IEP (calculated)
6.572
GRAVY (calculated)
-0.120
Length
446 amino acids
Sequence
(BLAST)
(BLAST)
001: MANVVQDEGS SSVTSSPLKT FSLMSLSPPS LSPYSPWLRE LKSDERGLCL IHLLLNCANH VAAGSIDRAN AFLEQIALLA APDGDAMQRI ASHFTEALAR
101: RALRLWPGLY HALDSTRAVV LPLAEAAAAR RHFLDLCPFL RLSYVVSNQA IMEAMEGERV VHVVDLNASD PTQWISLLQG LRARPEGPPH LKITGVHEHK
201: ELLNHTAARL SDEAERLDIP FQFNAVVSRL DNLDVESLRV KTGEALAIST VLQLHSLLAS NDGAGDPRQA QRTAPSALSS PFAPASSPAR MESFLALLWG
301: LSPKIMVVTE QESNHNVPAL NERFVEALFY YAALFDCLDS TVPRQSVERL RVEKMLLGEE IKNIIACEGW ERKERHEKLE RWAQRMDMAG FGPLPLSYYG
401: LLQARRLLQS FGCEGYKVKE ENGCFLLCWQ ERPLFSIAAW RCKRYD
101: RALRLWPGLY HALDSTRAVV LPLAEAAAAR RHFLDLCPFL RLSYVVSNQA IMEAMEGERV VHVVDLNASD PTQWISLLQG LRARPEGPPH LKITGVHEHK
201: ELLNHTAARL SDEAERLDIP FQFNAVVSRL DNLDVESLRV KTGEALAIST VLQLHSLLAS NDGAGDPRQA QRTAPSALSS PFAPASSPAR MESFLALLWG
301: LSPKIMVVTE QESNHNVPAL NERFVEALFY YAALFDCLDS TVPRQSVERL RVEKMLLGEE IKNIIACEGW ERKERHEKLE RWAQRMDMAG FGPLPLSYYG
401: LLQARRLLQS FGCEGYKVKE ENGCFLLCWQ ERPLFSIAAW RCKRYD
001: MVAMFQEDNG TSSVASSPLQ VFSTMSLNRP TLLASSSPFH CLKDLKPEER GLYLIHLLLT CANHVASGSL QNANAALEQL SHLASPDGDT MQRIAAYFTE
101: ALANRILKSW PGLYKALNAT QTRTNNVSEE IHVRRLFFEM FPILKVSYLL TNRAILEAME GEKMVHVIDL DASEPAQWLA LLQAFNSRPE GPPHLRITGV
201: HHQKEVLEQM AHRLIEEAEK LDIPFQFNPV VSRLDCLNVE QLRVKTGEAL AVSSVLQLHT FLASDDDLMR KNCALRFQNN PSGVDLQRVL MMSHGSAAEA
301: RENDMSNNNG YSPSGDSASS LPLPSSGRTD SFLNAIWGLS PKVMVVTEQD SDHNGSTLME RLLESLYTYA ALFDCLETKV PRTSQDRIKV EKMLFGEEIK
401: NIISCEGFER RERHEKLEKW SQRIDLAGFG NVPLSYYAML QARRLLQGCG FDGYRIKEES GCAVICWQDR PLYSVSAWRC RK
101: ALANRILKSW PGLYKALNAT QTRTNNVSEE IHVRRLFFEM FPILKVSYLL TNRAILEAME GEKMVHVIDL DASEPAQWLA LLQAFNSRPE GPPHLRITGV
201: HHQKEVLEQM AHRLIEEAEK LDIPFQFNPV VSRLDCLNVE QLRVKTGEAL AVSSVLQLHT FLASDDDLMR KNCALRFQNN PSGVDLQRVL MMSHGSAAEA
301: RENDMSNNNG YSPSGDSASS LPLPSSGRTD SFLNAIWGLS PKVMVVTEQD SDHNGSTLME RLLESLYTYA ALFDCLETKV PRTSQDRIKV EKMLFGEEIK
401: NIISCEGFER RERHEKLEKW SQRIDLAGFG NVPLSYYAML QARRLLQGCG FDGYRIKEES GCAVICWQDR PLYSVSAWRC RK
Arabidopsis Description
SCL3Scarecrow-like protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPR8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.