Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- mitochondrion 5
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G133800.1 | Wheat | mitochondrion | 98.2 | 98.73 |
| TraesCS5D01G139500.1 | Wheat | mitochondrion | 98.74 | 98.03 |
| HORVU5Hr1G043310.1 | Barley | cytosol | 90.63 | 91.45 |
| Os12t0138100-00 | Rice | cytosol | 70.27 | 79.27 |
| Os11t0141500-00 | Rice | cytosol | 70.27 | 79.27 |
| Zm00001d023248_P001 | Maize | cytosol | 65.95 | 72.33 |
| KXG22822 | Sorghum | mitochondrion | 67.39 | 64.82 |
| CDY68881 | Canola | cytosol | 22.16 | 50.41 |
| CDY45059 | Canola | cytosol | 27.21 | 49.67 |
| GSMUA_Achr8P09690_001 | Banana | cytosol | 36.94 | 45.96 |
| TraesCS3A01G487500.1 | Wheat | cytosol, plastid | 36.58 | 45.41 |
| Bra018848.1-P | Field mustard | cytosol | 34.41 | 43.41 |
| GSMUA_Achr11P... | Banana | cytosol, nucleus, peroxisome, plastid | 36.94 | 43.34 |
| VIT_13s0019g01220.t01 | Wine grape | cytosol | 37.3 | 43.31 |
| Bra014251.1-P | Field mustard | cytosol | 34.59 | 43.15 |
| Solyc12g099900.1.1 | Tomato | nucleus | 36.04 | 42.73 |
| KRH29080 | Soybean | cytosol | 34.95 | 42.64 |
| KRH24106 | Soybean | cytosol, nucleus, peroxisome | 34.95 | 42.64 |
| CDY22795 | Canola | cytosol, plastid | 34.05 | 42.57 |
| CDY03601 | Canola | cytosol | 34.23 | 42.32 |
| PGSC0003DMT400011839 | Potato | cytosol | 35.68 | 42.31 |
| KRH77666 | Soybean | endoplasmic reticulum, nucleus, peroxisome, plastid | 35.32 | 42.15 |
| VIT_06s0009g02390.t01 | Wine grape | cytosol | 35.68 | 41.77 |
| KRH27822 | Soybean | nucleus, plastid | 35.32 | 41.44 |
| AT1G50420.1 | Thale cress | cytosol | 35.32 | 40.66 |
| PGSC0003DMT400058477 | Potato | cytosol | 34.41 | 40.47 |
| Solyc01g008910.2.1 | Tomato | cytosol | 34.05 | 39.71 |
| Os12t0138200-00 | Rice | cytosol | 36.22 | 39.41 |
| KRH29971 | Soybean | cytosol | 31.35 | 39.37 |
| Os11t0141700-00 | Rice | cytosol | 35.86 | 39.33 |
| KRH62871 | Soybean | cytosol | 31.17 | 39.05 |
| TraesCS4A01G185900.1 | Wheat | cytosol | 30.99 | 38.56 |
| TraesCS2A01G532900.1 | Wheat | cytosol | 29.73 | 38.37 |
| TraesCS4A01G466700.1 | Wheat | cytosol, nucleus, peroxisome | 18.38 | 31.29 |
| TraesCS5A01G511900.1 | Wheat | cytosol | 23.24 | 29.59 |
| TraesCS6A01G159500.1 | Wheat | cytosol | 19.46 | 27.55 |
| TraesCS3A01G233000.1 | Wheat | plasma membrane | 24.68 | 27.35 |
| TraesCS2A01G200700.1 | Wheat | cytosol | 21.8 | 26.89 |
| TraesCS1A01G413800.1 | Wheat | cytosol, nucleus, plastid | 23.24 | 26.76 |
| TraesCS7A01G382800.1 | Wheat | cytosol | 19.28 | 25.12 |
| TraesCS3A01G392600.1 | Wheat | cytosol | 21.62 | 25.1 |
| TraesCS1A01G304000.1 | Wheat | peroxisome | 22.16 | 25.05 |
| TraesCS3A01G392400.1 | Wheat | cytosol | 23.42 | 25.05 |
| TraesCS3A01G392500.1 | Wheat | cytosol | 22.88 | 24.56 |
| TraesCS2A01G304000.1 | Wheat | cytosol, mitochondrion, nucleus | 20.18 | 23.33 |
| TraesCS4A01G271000.1 | Wheat | cytosol | 24.32 | 21.77 |
| TraesCS4A01G260600.1 | Wheat | cytosol | 21.26 | 21.65 |
| TraesCS4A01G191300.1 | Wheat | cytosol | 23.42 | 21.07 |
| TraesCS4A01G430600.1 | Wheat | plastid | 23.24 | 20.77 |
| TraesCS7A01G059000.1 | Wheat | plastid | 23.42 | 20.73 |
| TraesCS5A01G144000.1 | Wheat | plastid | 23.6 | 20.22 |
| CDY37137 | Canola | plastid | 33.87 | 19.71 |
| TraesCS2A01G096800.1 | Wheat | nucleus | 24.5 | 19.02 |
| GSMUA_Achr11P... | Banana | cytosol | 34.23 | 17.24 |
| Os12t0138166-00 | Rice | endoplasmic reticulum, extracellular | 3.6 | 5.67 |
| Os11t0141550-01 | Rice | cytosol | 0.72 | 3.1 |
Protein Annotations
| EnsemblPlants:TraesCS5A01G135000.1 | EnsemblPlantsGene:TraesCS5A01G135000 | InterPro:IPR005202 | InterPro:TF_GRAS | PANTHER:PTHR31636 | PANTHER:PTHR31636:SF32 |
| PFAM:PF03514 | PFscan:PS50985 | SEG:seg | MapMan:15.5.12 | : | : |
Description
No Description!
Coordinates
chr5A:+:304925731..304927502
Molecular Weight (calculated)
61162.9 Da
IEP (calculated)
8.073
GRAVY (calculated)
-0.292
Length
555 amino acids
Sequence
(BLAST)
(BLAST)
001: MRTKMALRVP QMRPALERPE VTQETSSPHR KGVEPRTWGG IASIMFQQQQ PQPQPQRQQQ QEDVMSSATS SPASTLYSPM PYAFAGTSVQ ELSSDQCSVR
101: LISLLYQCAS EVAAGEFDRA NLCLEHIMQL ASLDAPHTLQ RLAAVFADAL ACKLLKLLPG LSRALLSSSS SDDAHLVPAA RRHMFDMLPF LKLAYLTTNH
201: AIVEAMEGER FVHVVDLSGP AANPAQWIAL FHSFRGRRDG TPNLRITAVH ESKEFLAGMS AVLVREAEAF DIPFQFNAVE ARLEDMDFDA LRHNLRVRSG
301: EALAVSVALQ LHRLLAADDT GGRRQGGLTP LQIIARSSPS SFGELLEREL NTRLQLSPDA SAFSSMSPQS PIGGHFPAVG QQRPKIGSFL SAVKALSPKI
401: MVVTEQEANH NGAAFHERFD EALNYYASLF DCLERAAAAQ RGSAAAERAR VERSVLGEEI RSIVACEGGE RKERHERARQ WAGRMEAAGM ERVGLSYSGA
501: MEARKLLQRS GWGGYEVRHD AEGHCFFLCW HKKPLYAVTA WRPAGYHHSG GARSR
101: LISLLYQCAS EVAAGEFDRA NLCLEHIMQL ASLDAPHTLQ RLAAVFADAL ACKLLKLLPG LSRALLSSSS SDDAHLVPAA RRHMFDMLPF LKLAYLTTNH
201: AIVEAMEGER FVHVVDLSGP AANPAQWIAL FHSFRGRRDG TPNLRITAVH ESKEFLAGMS AVLVREAEAF DIPFQFNAVE ARLEDMDFDA LRHNLRVRSG
301: EALAVSVALQ LHRLLAADDT GGRRQGGLTP LQIIARSSPS SFGELLEREL NTRLQLSPDA SAFSSMSPQS PIGGHFPAVG QQRPKIGSFL SAVKALSPKI
401: MVVTEQEANH NGAAFHERFD EALNYYASLF DCLERAAAAQ RGSAAAERAR VERSVLGEEI RSIVACEGGE RKERHERARQ WAGRMEAAGM ERVGLSYSGA
501: MEARKLLQRS GWGGYEVRHD AEGHCFFLCW HKKPLYAVTA WRPAGYHHSG GARSR
001: MVAMFQEDNG TSSVASSPLQ VFSTMSLNRP TLLASSSPFH CLKDLKPEER GLYLIHLLLT CANHVASGSL QNANAALEQL SHLASPDGDT MQRIAAYFTE
101: ALANRILKSW PGLYKALNAT QTRTNNVSEE IHVRRLFFEM FPILKVSYLL TNRAILEAME GEKMVHVIDL DASEPAQWLA LLQAFNSRPE GPPHLRITGV
201: HHQKEVLEQM AHRLIEEAEK LDIPFQFNPV VSRLDCLNVE QLRVKTGEAL AVSSVLQLHT FLASDDDLMR KNCALRFQNN PSGVDLQRVL MMSHGSAAEA
301: RENDMSNNNG YSPSGDSASS LPLPSSGRTD SFLNAIWGLS PKVMVVTEQD SDHNGSTLME RLLESLYTYA ALFDCLETKV PRTSQDRIKV EKMLFGEEIK
401: NIISCEGFER RERHEKLEKW SQRIDLAGFG NVPLSYYAML QARRLLQGCG FDGYRIKEES GCAVICWQDR PLYSVSAWRC RK
101: ALANRILKSW PGLYKALNAT QTRTNNVSEE IHVRRLFFEM FPILKVSYLL TNRAILEAME GEKMVHVIDL DASEPAQWLA LLQAFNSRPE GPPHLRITGV
201: HHQKEVLEQM AHRLIEEAEK LDIPFQFNPV VSRLDCLNVE QLRVKTGEAL AVSSVLQLHT FLASDDDLMR KNCALRFQNN PSGVDLQRVL MMSHGSAAEA
301: RENDMSNNNG YSPSGDSASS LPLPSSGRTD SFLNAIWGLS PKVMVVTEQD SDHNGSTLME RLLESLYTYA ALFDCLETKV PRTSQDRIKV EKMLFGEEIK
401: NIISCEGFER RERHEKLEKW SQRIDLAGFG NVPLSYYAML QARRLLQGCG FDGYRIKEES GCAVICWQDR PLYSVSAWRC RK
Arabidopsis Description
SCL3Scarecrow-like protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPR8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.