Factsheet for GSMUA_Achr11P20260_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr6P09070_001
GSMUA_Achr6P22070_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G50420.1	GSMUA_Achr10P...	AT4G22220.1	21798944
AT1G50420.1	GSMUA_Achr6P09070_001	AT4G22220.1	21798944
AT1G50420.1	GSMUA_Achr6P22070_001	AT4G22220.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P09690_001	Banana	cytosol	31.13	76.91
GSMUA_Achr11P...	Banana	cytosol, nucleus, peroxisome, plastid	30.76	71.67
HORVU3Hr1G106260.1	Barley	cytosol	10.25	63.13
CDY45059	Canola	cytosol	17.33	62.83
CDY68881	Canola	cytosol	13.88	62.7
Os01t0948200-00	Rice	cytosol	24.59	61.31
TraesCS3A01G487500.1	Wheat	cytosol, plastid	24.5	60.4
TraesCS3B01G535100.1	Wheat	cytosol	24.5	59.6
TraesCS3D01G482600.1	Wheat	cytosol	24.59	59.56
Zm00001d042127_P001	Maize	plastid	24.14	59.51
Bra014251.1-P	Field mustard	cytosol	23.87	59.1
Solyc12g099900.1.1	Tomato	nucleus	24.86	58.55
PGSC0003DMT400011839	Potato	cytosol	24.86	58.55
CDY03601	Canola	cytosol	23.77	58.35
Bra018848.1-P	Field mustard	cytosol	23.23	58.18
Zm00001d011881_P001	Maize	cytosol	23.68	58.13
EES02045	Sorghum	cytosol, plastid	24.05	57.73
CDY22795	Canola	cytosol, plastid	23.14	57.43
VIT_06s0009g02390.t01	Wine grape	cytosol	24.59	57.17
VIT_13s0019g01220.t01	Wine grape	cytosol	24.77	57.11
PGSC0003DMT400058477	Potato	cytosol	23.96	55.93
KRH29080	Soybean	cytosol	22.87	55.38
Solyc01g008910.2.1	Tomato	cytosol	23.68	54.83
AT1G50420.1	Thale cress	cytosol	23.96	54.77
KRH24106	Soybean	cytosol, nucleus, peroxisome	22.32	54.07
KRH27822	Soybean	nucleus, plastid	22.87	53.28
KRH77666	Soybean	endoplasmic reticulum, nucleus, peroxisome, plastid	22.41	53.12
KRH29971	Soybean	cytosol	19.06	47.51
KRH62871	Soybean	cytosol	18.97	47.18
Os06t0211500-00	Rice	cytosol	7.8	45.03
HORVU2Hr1G113490.1	Barley	cytosol	11.62	40.63
HORVU2Hr1G113480.1	Barley	cytosol	11.62	40.63
TraesCS2D01G534700.1	Wheat	cytosol	11.52	40.45
TraesCS6D01G055100.1	Wheat	cytosol	11.25	39.49
Os12t0138100-00	Rice	cytosol	17.15	38.41
Os11t0141500-00	Rice	cytosol	17.06	38.21
TraesCS2D01G055700.1	Wheat	extracellular, golgi, mitochondrion, plastid	10.62	37.5
TraesCS2A01G532900.1	Wheat	cytosol	14.43	36.98
Zm00001d023248_P001	Maize	cytosol	16.88	36.76
CDY37137	Canola	plastid	30.58	35.32
GSMUA_Achr1P16230_001	Banana	cytosol	11.25	34.83
GSMUA_Achr1P09360_001	Banana	cytosol	11.62	34.69
TraesCS5B01G133800.1	Wheat	mitochondrion	17.33	34.6
HORVU5Hr1G043310.1	Barley	cytosol	17.24	34.55
TraesCS5A01G135000.1	Wheat	mitochondrion	17.24	34.23
TraesCS5D01G139500.1	Wheat	mitochondrion	17.33	34.17
TraesCS4B01G133000.1	Wheat	cytosol, nucleus, plastid	4.45	33.56
GSMUA_AchrUn_...	Banana	cytosol	11.62	33.51
HORVU2Hr1G113360.1	Barley	cytosol	14.43	33.47
TraesCS2B01G562400.1	Wheat	cytosol	14.25	33.12
GSMUA_Achr7P16880_001	Banana	cytosol	11.34	32.98
GSMUA_Achr1P19470_001	Banana	nucleus	11.43	32.9
EES09233	Sorghum	cytosol	14.34	32.44
Zm00001d037901_P001	Maize	cytosol, peroxisome, plastid	13.52	32.25
EES16518	Sorghum	cytosol	13.07	32.0
KXG22822	Sorghum	mitochondrion	16.52	31.54
OQU77884	Sorghum	plasma membrane	12.79	30.99
Os12t0138200-00	Rice	cytosol	14.16	30.59
GSMUA_Achr4P23590_001	Banana	cytosol, mitochondrion, nucleus, plastid	8.53	30.52
Os11t0141700-00	Rice	cytosol	13.97	30.43
OQU77885	Sorghum	cytosol	13.25	30.29
HORVU4Hr1G026010.3	Barley	cytosol	12.25	30.27
TraesCS4A01G185900.1	Wheat	cytosol	12.16	30.04
TraesCSU01G014000.1	Wheat	cytosol	7.99	29.93
Zm00001d052464_P001	Maize	cytosol, plasma membrane, plastid	13.07	29.57
Zm00001d052463_P001	Maize	cytosol	13.61	28.68
TraesCS4D01G127800.2	Wheat	mitochondrion	12.34	28.63
GSMUA_Achr10P...	Banana	cytosol	11.89	27.41
GSMUA_Achr8P18250_001	Banana	cytosol	11.89	27.35
GSMUA_Achr6P17870_001	Banana	cytosol	10.71	26.46
GSMUA_Achr8P01180_001	Banana	nucleus	10.8	26.04
Os05t0378200-00	Rice	cytosol	12.34	24.68
GSMUA_Achr10P...	Banana	nucleus	9.8	24.6
Zm00001d023247_P001	Maize	plastid	12.43	24.46
Os05t0378500-00	Rice	plastid	12.25	24.11
GSMUA_Achr6P34550_001	Banana	mitochondrion, nucleus, peroxisome, plastid	13.34	24.06
GSMUA_Achr11P...	Banana	plastid	12.43	23.87
GSMUA_AchrUn_...	Banana	cytosol	11.43	23.55
GSMUA_Achr6P20830_001	Banana	nucleus	12.98	23.44
GSMUA_Achr3P30530_001	Banana	cytosol	12.07	23.05
GSMUA_Achr1P18840_001	Banana	cytosol	12.25	21.99
GSMUA_Achr4P07320_001	Banana	cytosol	11.07	21.75
GSMUA_Achr1P21300_001	Banana	nucleus	10.16	21.71
GSMUA_Achr8P09400_001	Banana	cytosol	13.07	21.43
GSMUA_Achr7P05850_001	Banana	mitochondrion	12.61	21.38
GSMUA_Achr5P21440_001	Banana	nucleus, plastid	12.52	19.52
GSMUA_Achr4P19750_001	Banana	cytosol, mitochondrion, nucleus, plastid	12.52	16.01
Os12t0138166-00	Rice	endoplasmic reticulum, extracellular	1.0	3.12
Os11t0141550-01	Rice	cytosol	0.09	0.78

Protein Annotations

Gene3D:1.10.10.10	MapMan:13.3.6.5.2.1.1.1	MapMan:15.5.12	Gene3D:3.40.50.10130	InterPro:ERCC4_domain	GO:GO:0000989
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003712	GO:GO:0003824	GO:GO:0004518
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016787	GO:GO:0090305	EnsemblPlantsGene:GSMUA_Achr11G20260_001	EnsemblPlants:GSMUA_Achr11P20260_001	EnsemblPlants:GSMUA_Achr11T20260_001	InterPro:IPR005202
InterPro:IPR036388	UniProt:M0RTV6	PFAM:PF02732	PFAM:PF03514	PFscan:PS50985	PANTHER:PTHR31636
PANTHER:PTHR31636:SF13	InterPro:Restrct_endonuc-II-like	SMART:SM00891	SUPFAM:SSF52980	InterPro:Scarecrow-like_3	InterPro:TF_GRAS
UniParc:UPI000294A2B2	InterPro:WH-like_DNA-bd_sf	SEG:seg	:	:	:

Description

Scarecrow-like protein 3 [Source:GMGC_GENE;Acc:GSMUA_Achr11G20260_001]

Coordinates

chr11:-:21248129..21267399

Molecular Weight (calculated)

123790.0 Da

IEP (calculated)

7.360

GRAVY (calculated)

-0.230

Length

1102 amino acids

Sequence
(BLAST)

0001: MENLRPVRCS ENEEIGLYLW RKRQEMVESN GLSENLDQTL SKAYRSICDA KTPIKTLKDL SQIKGVGKWI LRLMQGFFQE SVADVPSTTN EAHAKGKKSK
0101: EPKRYVPKKN SVAYALLITL YRAMTNGSSY MKKQELIDAA EASGLSRTSI ASDKSKQPGQ FGISSRDWYT GWNCMKSLIS KGLVVKSSCP AKYMLTQEGQ
0201: EAARECLLRS GSIDLEPAKA TCRSHSALDG QSASPVDLTL QSASVSCQTE MIDIPTEYVD RYKQADFLDS DHDSANLEKC SYSTAETCMP IVLGIFTLNE
0301: MRLIYCRLHS LNVSFIPYSY PNLMVVVPDS IANIPVGDAR CRNSVYADAA QSSFNLRACT SFDSPMHKPS ANDATKGNDN AIAMPPYRSG EKFEDIYDVI
0401: LILDDRENFG SRSRKIVDNI HTQFNILVEF RRLPVGDGIW IARHRGCNTE YVLDFIVERK RVDDLCRSIR DNRYKDQKLR LQRCGLQKLI YLVEGDQNCL
0501: EAAESIKTAC FTTEILEGFD VQRTSGFADT VRRYGYLTKS IIQYYTMHFI DKAMCSRVCP SYDEFVKKCQ DLEKMTISDV FALQLMQVPQ VTEEIALAVV
0601: DLYPTLLSLA QAYSHIEGDL RAQEELLKNR SKIISASASR NIFKLIWGHL ARFICLPERA KRAMMPLLAG VVVQDDGSSS SVTSSPLETL SLSPPSLSPH
0701: SPWVRELKSD ERGLCLIHLL LDCANRVASG GSLDPANAAL EQIALLAAPD GDAMQRIASH FAEALARRAI RSWPGLCHAL DSARVLPLAE AAVARRHFLD
0801: LCPFLRLSFV VTNQAIMEAM EGERVVHVVD LNASDPAQWI PLLQALSSRS EGPPHLKITG IHEHKEVLHY TAIRLSEAAE RLDVPFQFIP LVSRLDNLDI
0901: ERLRVKTGEA LAISSVLQLH SLLATEDKDH LANTHSTSAE SAARPPTRIQ SFLASLWGLS PKIVVVTEQE ANHNGKTLKE RLVEALFYYA AVFDGLDLTV
1001: PRQSVERLRV EKMLFGEEIR NIIACEGLER KERHEKLERW SQRMSMAGFR LLPLSYYGLL QARRLLQSFG WQGYKVKEEN GCFMMCWQDR PLFSVSAWSC
1101: NQ

Best Arabidopsis Sequence Match ( AT1G50420.1 )
(BLAST)

001: MVAMFQEDNG TSSVASSPLQ VFSTMSLNRP TLLASSSPFH CLKDLKPEER GLYLIHLLLT CANHVASGSL QNANAALEQL SHLASPDGDT MQRIAAYFTE
101: ALANRILKSW PGLYKALNAT QTRTNNVSEE IHVRRLFFEM FPILKVSYLL TNRAILEAME GEKMVHVIDL DASEPAQWLA LLQAFNSRPE GPPHLRITGV
201: HHQKEVLEQM AHRLIEEAEK LDIPFQFNPV VSRLDCLNVE QLRVKTGEAL AVSSVLQLHT FLASDDDLMR KNCALRFQNN PSGVDLQRVL MMSHGSAAEA
301: RENDMSNNNG YSPSGDSASS LPLPSSGRTD SFLNAIWGLS PKVMVVTEQD SDHNGSTLME RLLESLYTYA ALFDCLETKV PRTSQDRIKV EKMLFGEEIK
401: NIISCEGFER RERHEKLEKW SQRIDLAGFG NVPLSYYAML QARRLLQGCG FDGYRIKEES GCAVICWQDR PLYSVSAWRC RK

Arabidopsis Description

SCL3Scarecrow-like protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPR8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.