Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- plastid 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G185900.1 | Wheat | cytosol | 91.78 | 30.04 |
| TraesCS4D01G127800.2 | Wheat | mitochondrion | 96.58 | 29.68 |
| HORVU4Hr1G026010.3 | Barley | cytosol | 88.36 | 28.92 |
| EES16518 | Sorghum | cytosol | 58.9 | 19.11 |
| CDY45059 | Canola | cytosol | 35.62 | 17.11 |
| CDY68881 | Canola | cytosol | 26.03 | 15.57 |
| TraesCS3B01G535100.1 | Wheat | cytosol | 42.47 | 13.69 |
| GSMUA_Achr8P09690_001 | Banana | cytosol | 38.36 | 12.56 |
| CDY22795 | Canola | cytosol, plastid | 36.3 | 11.94 |
| GSMUA_Achr11P... | Banana | cytosol, nucleus, peroxisome, plastid | 38.36 | 11.84 |
| Bra018848.1-P | Field mustard | cytosol | 35.62 | 11.82 |
| Zm00001d023247_P001 | Maize | plastid | 45.21 | 11.79 |
| Bra014251.1-P | Field mustard | cytosol | 35.62 | 11.69 |
| CDY03601 | Canola | cytosol | 35.62 | 11.58 |
| KRH24106 | Soybean | cytosol, nucleus, peroxisome | 35.62 | 11.43 |
| KRH29080 | Soybean | cytosol | 34.93 | 11.21 |
| Solyc12g099900.1.1 | Tomato | nucleus | 35.62 | 11.11 |
| AT1G50420.1 | Thale cress | cytosol | 35.62 | 10.79 |
| PGSC0003DMT400011839 | Potato | cytosol | 34.25 | 10.68 |
| VIT_13s0019g01220.t01 | Wine grape | cytosol | 34.93 | 10.67 |
| KRH29971 | Soybean | cytosol | 32.19 | 10.63 |
| KRH62871 | Soybean | cytosol | 32.19 | 10.61 |
| PGSC0003DMT400058477 | Potato | cytosol | 34.25 | 10.59 |
| TraesCS5B01G133800.1 | Wheat | mitochondrion | 39.73 | 10.51 |
| Solyc01g008910.2.1 | Tomato | cytosol | 34.25 | 10.5 |
| VIT_06s0009g02390.t01 | Wine grape | cytosol | 33.56 | 10.34 |
| KRH77666 | Soybean | endoplasmic reticulum, nucleus, peroxisome, plastid | 32.88 | 10.32 |
| TraesCS2B01G228000.1 | Wheat | cytosol | 31.51 | 10.24 |
| TraesCS3B01G424500.1 | Wheat | cytosol | 35.62 | 10.06 |
| TraesCS3B01G424600.1 | Wheat | cytosol | 35.62 | 10.02 |
| TraesCS3B01G262400.1 | Wheat | mitochondrion, plastid | 36.3 | 10.02 |
| KRH27822 | Soybean | nucleus, plastid | 31.51 | 9.73 |
| TraesCS4B01G342800.1 | Wheat | cytosol | 28.08 | 9.32 |
| TraesCS2B01G562400.1 | Wheat | cytosol | 30.14 | 9.28 |
| TraesCS1B01G314500.1 | Wheat | peroxisome | 28.08 | 8.89 |
| TraesCS4B01G043100.1 | Wheat | cytosol | 35.62 | 8.37 |
| TraesCS6B01G191800.1 | Wheat | cytosol | 22.6 | 8.35 |
| TraesCS7B01G285500.1 | Wheat | cytosol | 23.97 | 8.16 |
| TraesCS1B01G443800.1 | Wheat | cytosol | 27.4 | 7.74 |
| TraesCS2B01G112100.1 | Wheat | nucleus | 36.99 | 7.55 |
| TraesCS5B01G143100.1 | Wheat | plastid | 31.51 | 7.21 |
| TraesCS4B01G054000.1 | Wheat | cytosol | 26.71 | 7.13 |
| TraesCS2B01G320700.1 | Wheat | cytosol, mitochondrion, nucleus | 21.92 | 6.58 |
| TraesCS4B01G124000.1 | Wheat | plastid | 29.45 | 6.33 |
| CDY37137 | Canola | plastid | 36.3 | 5.56 |
| GSMUA_Achr11P... | Banana | cytosol | 33.56 | 4.45 |
Protein Annotations
| EnsemblPlants:TraesCS4B01G133000.1 | EnsemblPlantsGene:TraesCS4B01G133000 | InterPro:IPR005202 | InterPro:TF_GRAS | PANTHER:PTHR31636 | PANTHER:PTHR31636:SF133 |
| PFAM:PF03514 | PFscan:PS50985 | MapMan:15.5.12 | : | : | : |
Description
No Description!
Coordinates
chr4B:-:172734397..172734837
Molecular Weight (calculated)
16766.9 Da
IEP (calculated)
6.946
GRAVY (calculated)
-0.590
Length
146 amino acids
Sequence
(BLAST)
(BLAST)
001: MMEQDADHNS PLFHDRFTKT VDYYAALFDS LNAVDAASPQ RARVERVLLG EEIKNILVCD GVHRHERHER LSQWEMHMQR CEVDHVPLSF EAIREGKERL
101: MSYGLKQCKS KEDKAGLLLC WGTTRLYSIS AWRPHSSNAA PNNVAG
101: MSYGLKQCKS KEDKAGLLLC WGTTRLYSIS AWRPHSSNAA PNNVAG
001: MVAMFQEDNG TSSVASSPLQ VFSTMSLNRP TLLASSSPFH CLKDLKPEER GLYLIHLLLT CANHVASGSL QNANAALEQL SHLASPDGDT MQRIAAYFTE
101: ALANRILKSW PGLYKALNAT QTRTNNVSEE IHVRRLFFEM FPILKVSYLL TNRAILEAME GEKMVHVIDL DASEPAQWLA LLQAFNSRPE GPPHLRITGV
201: HHQKEVLEQM AHRLIEEAEK LDIPFQFNPV VSRLDCLNVE QLRVKTGEAL AVSSVLQLHT FLASDDDLMR KNCALRFQNN PSGVDLQRVL MMSHGSAAEA
301: RENDMSNNNG YSPSGDSASS LPLPSSGRTD SFLNAIWGLS PKVMVVTEQD SDHNGSTLME RLLESLYTYA ALFDCLETKV PRTSQDRIKV EKMLFGEEIK
401: NIISCEGFER RERHEKLEKW SQRIDLAGFG NVPLSYYAML QARRLLQGCG FDGYRIKEES GCAVICWQDR PLYSVSAWRC RK
101: ALANRILKSW PGLYKALNAT QTRTNNVSEE IHVRRLFFEM FPILKVSYLL TNRAILEAME GEKMVHVIDL DASEPAQWLA LLQAFNSRPE GPPHLRITGV
201: HHQKEVLEQM AHRLIEEAEK LDIPFQFNPV VSRLDCLNVE QLRVKTGEAL AVSSVLQLHT FLASDDDLMR KNCALRFQNN PSGVDLQRVL MMSHGSAAEA
301: RENDMSNNNG YSPSGDSASS LPLPSSGRTD SFLNAIWGLS PKVMVVTEQD SDHNGSTLME RLLESLYTYA ALFDCLETKV PRTSQDRIKV EKMLFGEEIK
401: NIISCEGFER RERHEKLEKW SQRIDLAGFG NVPLSYYAML QARRLLQGCG FDGYRIKEES GCAVICWQDR PLYSVSAWRC RK
Arabidopsis Description
SCL3Scarecrow-like protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPR8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.