Factsheet for Zm00001d023247_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 1
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
nucleus 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid, secretory
MultiLoc:	cytosol
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	plastid

plastid: 22065420

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d011514_P001
Zm00001d029638_P001
Zm00001d030959_P001
Zm00001d043816_P001
Zm00001d043971_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G50420.1	Zm00001d011514_P001	AT4G22220.1	21798944
AT1G50420.1	Zm00001d029638_P001	AT4G22220.1	21798944
AT1G50420.1	Zm00001d030959_P001	AT4G22220.1	21798944
AT1G50420.1	Zm00001d043816_P001	AT4G22220.1	21798944
AT1G50420.1	Zm00001d043971_P001	AT4G22220.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES16518	Sorghum	cytosol	47.86	59.56
TraesCS4A01G185900.1	Wheat	cytosol	38.39	48.21
HORVU4Hr1G026010.3	Barley	cytosol	38.39	48.21
TraesCS4B01G133000.1	Wheat	cytosol, nucleus, plastid	11.79	45.21
TraesCS4D01G127800.2	Wheat	mitochondrion	37.14	43.79
CDY68881	Canola	cytosol	16.61	38.11
CDY45059	Canola	cytosol	20.36	37.5
Zm00001d023248_P001	Maize	cytosol	33.04	36.56
Zm00001d042127_P001	Maize	plastid	28.93	36.24
Zm00001d052464_P001	Maize	cytosol, plasma membrane, plastid	31.07	35.73
Zm00001d011881_P001	Maize	cytosol	27.86	34.74
GSMUA_Achr8P09690_001	Banana	cytosol	26.61	33.41
Bra018848.1-P	Field mustard	cytosol	25.89	32.95
Bra014251.1-P	Field mustard	cytosol	26.07	32.81
GSMUA_Achr11P...	Banana	cytosol, nucleus, peroxisome, plastid	27.32	32.35
CDY03601	Canola	cytosol	25.89	32.29
CDY22795	Canola	cytosol, plastid	25.54	32.21
Zm00001d052463_P001	Maize	cytosol	30.0	32.12
KRH29080	Soybean	cytosol	26.07	32.09
KRH24106	Soybean	cytosol, nucleus, peroxisome	25.89	31.87
PGSC0003DMT400011839	Potato	cytosol	26.25	31.41
Solyc12g099900.1.1	Tomato	nucleus	26.25	31.41
KRH77666	Soybean	endoplasmic reticulum, nucleus, peroxisome, plastid	25.71	30.97
AT1G50420.1	Thale cress	cytosol	26.43	30.71
VIT_13s0019g01220.t01	Wine grape	cytosol	25.54	29.92
KRH27822	Soybean	nucleus, plastid	25.18	29.81
VIT_06s0009g02390.t01	Wine grape	cytosol	25.18	29.75
Solyc01g008910.2.1	Tomato	cytosol	25.18	29.62
PGSC0003DMT400058477	Potato	cytosol	24.82	29.45
KRH29971	Soybean	cytosol	23.04	29.19
KRH62871	Soybean	cytosol	22.86	28.89
Zm00001d037901_P001	Maize	cytosol, peroxisome, plastid	20.89	25.32
Zm00001d044065_P001	Maize	cytosol	19.11	22.53
Zm00001d042472_P001	Maize	cytosol	21.25	22.12
Zm00001d021826_P001	Maize	cytosol	17.5	21.68
Zm00001d009646_P001	Maize	plastid	18.21	21.47
Zm00001d015815_P001	Maize	cytosol	15.71	21.15
Zm00001d038518_P001	Maize	cytosol	18.21	20.52
Zm00001d046783_P001	Maize	mitochondrion	15.89	19.52
Zm00001d025133_P001	Maize	cytosol	16.07	18.22
Zm00001d013385_P001	Maize	cytosol, plastid	17.86	17.57
Zm00001d033680_P001	Maize	nucleus	19.64	17.46
Zm00001d033834_P001	Maize	cytosol, plastid	17.14	17.42
Zm00001d013465_P001	Maize	cytosol	19.11	17.12
Zm00001d003657_P001	Maize	cytosol, mitochondrion, nucleus	14.82	16.67
Zm00001d052380_P001	Maize	plastid	19.82	16.62
Zm00001d045507_P001	Maize	plastid	18.04	16.4
Zm00001d005029_P001	Maize	plastid	19.46	16.08
Zm00001d049249_P001	Maize	plastid	21.61	15.61
CDY37137	Canola	plastid	26.25	15.41
GSMUA_Achr11P...	Banana	cytosol	24.46	12.43

Protein Annotations

Gene3D:1.10.620.20	MapMan:15.5.12	MapMan:5.1.7.1	UniProt:A0A1D6IQZ0	ProteinID:AQK38712.1	InterPro:Fatty_acid_desaturase-2
InterPro:Ferritin-like_SF	GO:GO:0003674	GO:GO:0003824	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0006629	GO:GO:0006631	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016491	GO:GO:0045300	GO:GO:0055114	InterPro:IPR005202	InterPro:IPR012348	PFAM:PF03405
PFAM:PF03514	PFscan:PS50985	PANTHER:PTHR31155	PANTHER:PTHR31155:SF7	InterPro:RNR-like	SUPFAM:SSF47240
InterPro:TF_GRAS	UniParc:UPI0008446347	EnsemblPlantsGene:Zm00001d023247	EnsemblPlants:Zm00001d023247_P001	EnsemblPlants:Zm00001d023247_T001	SEG:seg

Description

GRAS-transcription factor 86Scarecrow-like protein 3

Coordinates

chr10:+:1452722..1454992

Molecular Weight (calculated)

61601.9 Da

IEP (calculated)

7.888

GRAVY (calculated)

-0.141

Length

560 amino acids

Sequence
(BLAST)

001: MAPPSVQEQE LVLLVPALYQ CAAHVSEGSL EKANFSLSEI KRLSSIADGP LQRLPDALAR RLLLPCEGLA GALIHPSDYF ERSGGVRSAR RTFAGLSPFL
101: HAAFAATNRA ILEAMEDEKV VRIVDLSCCS AASHPCQWLD LLHGFVHGRR PPPEVRLTVV HDDDDFVAGM RAALAKEAHR LNIPFQFNHV LVVRGGGLET
201: MDLRGDFRDV LGVKYGEAVA LQNMATTAAA QLKHMACSSR SPASILNYPR TPSPQCQCQV PRPLASFLGA VHHRLKPSIV VVMEQDANHN APPFSARFAE
301: ALGYYAALFD SLDAVAAASA AGDRAQVERM VLGEEIKNVL LCEGASRLER HERLSQWAMY MDASGFRRVP LSFRAIRESA QRRAAISQAR ATFVSHARTA
401: RLAGLHGDAC LAKLCGVIAA DERRHEAAYT RASDRAFEED PDGMVRALAA VMRAKVTMPG ELMADGRDDR LFDHFSAVAR RSGVYTAADY ADMVEHFVRR
501: WKVAELDAGL SGEGRRAQDY VCGLPRKIRR MEELAQDRAA QMEAQSVCFS WVFDRPVRIH

Best Arabidopsis Sequence Match ( AT3G02620.1 )
(BLAST)

001: MALLLNSTMT VAMKQNPATA VSFMQTTCLG SSFSPPRHLQ VSCVATNPSK TFRPIKEVSN QVTHTITQEK LEIFKSMENW AQENLLSYLK PVETSWQPQD
101: FLPETKDEDR FYEQVKELRD RTKEIPDDYF VVLVGDMITE EALPTYQTVM NTLDGAKDET GVSLTPWAVW LRAWTAEENR HGDLLNKYLY LSGRVDTRHV
201: EKTIQYLIGS GMDTKYENNP YNGYIYTSFQ ERATFISHAN TAKLATTYGD TTLAKICGTI AADEKRHEMA YTRIVEKLFE IDPDGTVQAL ASMMRKRITM
301: PAQLMHDGRD DNLFDHYAAV AQRIGVYTAT DYAGILEFLL RRWEVEKLGM GLSGEGRRAQ DYLCTLPQRI RRLEERADDR VKRASKSKPS VSFSWIYGRE
401: VEL

Arabidopsis Description

Plant stearoyl-acyl-carrier-protein desaturase family protein [Source:UniProtKB/TrEMBL;Acc:A0A178VGR6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.