Factsheet for Zm00001d049249_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU83473	Sorghum	cytosol	49.68	91.23
TraesCS2D01G095300.1	Wheat	nucleus	71.87	77.9
TraesCS2A01G096800.1	Wheat	nucleus	71.74	77.76
TraesCS2B01G112100.1	Wheat	nucleus	71.74	77.76
PGSC0003DMT400052191	Potato	cytosol	33.68	69.6
GSMUA_Achr6P20830_001	Banana	nucleus	43.74	55.57
VIT_14s0068g01610.t01	Wine grape	plastid	45.94	53.29
KRG94590	Soybean	plastid	45.81	52.13
KRH06900	Soybean	plastid	45.03	50.87
Solyc02g094340.1.1	Tomato	nucleus	42.32	48.24
Zm00001d042472_P001	Maize	cytosol	24.65	35.5
Zm00001d021826_P001	Maize	cytosol	20.52	35.18
Zm00001d044065_P001	Maize	cytosol	21.42	34.95
Zm00001d042127_P001	Maize	plastid	20.0	34.68
Zm00001d011881_P001	Maize	cytosol	20.0	34.52
Zm00001d015815_P001	Maize	cytosol	16.77	31.25
Zm00001d013465_P001	Maize	cytosol	24.13	29.92
Zm00001d033680_P001	Maize	nucleus	24.13	29.68
Zm00001d038518_P001	Maize	cytosol	18.97	29.58
Zm00001d023248_P001	Maize	cytosol	19.23	29.45
Zm00001d025133_P001	Maize	cytosol	18.19	28.54
Zm00001d046783_P001	Maize	mitochondrion	16.65	28.29
Zm00001d003657_P001	Maize	cytosol, mitochondrion, nucleus	17.94	27.91
Zm00001d009646_P001	Maize	plastid	17.03	27.79
Zm00001d013385_P001	Maize	cytosol, plastid	20.26	27.59
Zm00001d033834_P001	Maize	cytosol, plastid	19.23	27.04
Zm00001d045507_P001	Maize	plastid	20.52	25.81
Zm00001d052464_P001	Maize	cytosol, plasma membrane, plastid	16.13	25.67
Zm00001d052380_P001	Maize	plastid	22.06	25.6
Zm00001d037901_P001	Maize	cytosol, peroxisome, plastid	14.97	25.11
Zm00001d005029_P001	Maize	plastid	21.81	24.93
Zm00001d052463_P001	Maize	cytosol	16.77	24.86
Zm00001d023247_P001	Maize	plastid	15.61	21.61

Protein Annotations

MapMan:11.6.2.2	MapMan:15.5.12	MapMan:26.9.2.1	MapMan:26.9.2.3	UniProt:A0A1D6PTF1	ProteinID:AQK49918.1
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	InterPro:IPR005202	PFAM:PF03514	PFscan:PS50985	PANTHER:PTHR31636	PANTHER:PTHR31636:SF3
InterPro:TF_GRAS	UniParc:UPI0008450834	EnsemblPlantsGene:Zm00001d049249	EnsemblPlants:Zm00001d049249_P001	EnsemblPlants:Zm00001d049249_T001	SEG:seg

Description

GRAS-transcription factor 28Protein SCARECROW

Coordinates

chr4:-:22848841..22851983

Molecular Weight (calculated)

82516.4 Da

IEP (calculated)

6.660

GRAVY (calculated)

-0.245

Length

775 amino acids

Sequence
(BLAST)

001: MCSSMGMLNC VDTTSGAGAK LQHQQQAPTS PTASVSESNI VAPSVSADID ANDALASLQA LRFDGDIDVE IQSPDIAMWE SLFAEQMGAA GGDFLMLSPR
101: RDFMAAGSPS RRDFMVSSPK RDYMVSSSPK RDYMMSSPMR DLMASSPKRE YMVSSPRRDS SSSRRSPFSP NLFSTSGGGH QHGYAAHGPT DGGVGGAGQP
201: LYGGLANHHG KGKSQSPLHK GYINNSGNKQ STGPSSLSCS SSYGHADNDL PSMDTCFLDD YKDGGYIGYQ QQMPGKQQAA PGIMVNNNGG CSTAVTTVGV
301: APSPSSHQLP TLSECLAMPE PAFVGGEEAA AGGLQMGVGL PSDLYYAGQF AGGGGGGLTT TSSSLQHQMA KSDHQWAAAE SSLHSMLGSV IQTEADEQEQ
401: DSGLQLVHLL LACADFVSKG DQPSALRHLH LLRRVASPLG DSMQRVASYF ADALAARLSS NNPSSSAGAG AGAGVAPYTF PPSPDTLKVY QILYQACPYI
501: KFAHFTANQA IFEAFHGEDR VHVVDLDILQ GYQWPAFLQA LAARPGGPPT LRLTGVGHPA AAVRETGRHL ASLAASLRVP FEFHAAVADR LERLRPAALH
601: RRVGEALAVN AVNRLHRVPA VHLGPLLSMI RDQAPKIMTL VEQEAGHNGP YFLGRFLEAL HYYSAIFDSL DATFPADSAQ RMKVEQCLLA PEIRNVVACE
701: GAERVARHER LDRWRRIMEG RGFEPVPLSP AAVAQSQVLL GLYGAGDGYR LTEDRGCLLL GWQDRATIAA SAWRC

Best Arabidopsis Sequence Match ( AT1G66350.1 )
(BLAST)

001: MKREHNHRES SAGEGGSSSM TTVIKEEAAG VDELLVVLGY KVRSSDMADV AHKLEQLEMV LGDGISNLSD ETVHYNPSDL SGWVESMLSD LDPTRIQEKP
101: DSEYDLRAIP GSAVYPRDEH VTRRSKRTRI ESELSSTRSV VVLDSQETGV RLVHALLACA EAVQQNNLKL ADALVKHVGL LASSQAGAMR KVATYFAEGL
201: ARRIYRIYPR DDVALSSFSD TLQIHFYESC PYLKFAHFTA NQAILEVFAT AEKVHVIDLG LNHGLQWPAL IQALALRPNG PPDFRLTGIG YSLTDIQEVG
301: WKLGQLASTI GVNFEFKSIA LNNLSDLKPE MLDIRPGLES VAVNSVFELH RLLAHPGSID KFLSTIKSIR PDIMTVVEQE ANHNGTVFLD RFTESLHYYS
401: SLFDSLEGPP SQDRVMSELF LGRQILNLVA CEGEDRVERH ETLNQWRNRF GLGGFKPVSI GSNAYKQASM LLALYAGADG YNVEENEGCL LLGWQTRPLI
501: ATSAWRINRV E

Arabidopsis Description

RGL1DELLA protein RGL1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C8Y3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.