Factsheet for VIT_14s0068g01610.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
nucleus 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400052191	Potato	cytosol	50.3	89.6
KRG94590	Soybean	plastid	71.41	70.04
KRH06900	Soybean	plastid	71.71	69.83
Solyc02g094340.1.1	Tomato	nucleus	68.41	67.21
OQU83473	Sorghum	cytosol	40.72	64.45
GSMUA_Achr6P20830_001	Banana	nucleus	50.6	55.41
TraesCS2B01G112100.1	Wheat	nucleus	51.95	48.53
TraesCS2D01G095300.1	Wheat	nucleus	51.95	48.53
TraesCS2A01G096800.1	Wheat	nucleus	51.8	48.39
Zm00001d049249_P001	Maize	plastid	53.29	45.94
VIT_19s0015g01930.t01	Wine grape	cytosol	22.6	36.56
VIT_18s0076g00200.t01	Wine grape	cytosol	17.81	36.5
VIT_17s0000g10300.t01	Wine grape	nucleus	28.29	36.42
VIT_03s0017g01660.t01	Wine grape	plastid	23.05	34.84
VIT_13s0019g01220.t01	Wine grape	cytosol	24.4	34.1
VIT_14s0006g00640.t01	Wine grape	cytosol	28.14	33.04
VIT_06s0009g02390.t01	Wine grape	cytosol	23.35	32.91
VIT_11s0016g04630.t01	Wine grape	plastid	25.9	32.52
VIT_19s0085g00540.t01	Wine grape	cytosol	25.15	31.7
VIT_01s0011g05260.t01	Wine grape	cytosol	26.95	30.51
VIT_07s0005g03700.t01	Wine grape	cytosol	21.86	29.98
VIT_02s0025g04000.t01	Wine grape	plastid	26.8	27.29
VIT_08s0056g00050.t01	Wine grape	nucleus	27.54	23.53
VIT_04s0023g01660.t01	Wine grape	cytosol	20.81	22.68

Protein Annotations

EntrezGene:100263422	wikigene:100263422	MapMan:11.6.2.2	MapMan:15.5.12	MapMan:26.9.2.1	MapMan:26.9.2.3
ProteinID:CBI21318	ProteinID:CBI21318.3	ncoils:Coil	UniProt:D7SVL9	EMBL:FN595232	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:IPR005202	EntrezGene:LOC100263422
wikigene:LOC100263422	PFAM:PF03514	PFscan:PS50985	PANTHER:PTHR31636	PANTHER:PTHR31636:SF3	InterPro:TF_GRAS
UniParc:UPI0001BE1812	ArrayExpress:VIT_14s0068g01610	EnsemblPlantsGene:VIT_14s0068g01610	EnsemblPlants:VIT_14s0068g01610.t01	RefSeq:XP_002274834	RefSeq:XP_002274834.2
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr14:-:25316395..25318488

Molecular Weight (calculated)

74009.8 Da

IEP (calculated)

6.177

GRAVY (calculated)

-0.310

Length

668 amino acids

Sequence
(BLAST)

001: MINSLCGSMG SLNSESSCTK LQQPTSPNKS ILESRKAPLS SDLESNSLAP SSLNLHGLKF DVDGDAEVQS PDSSMWEAFF TDHFDSDFMI SSPVRSSPMN
101: YNYNHVQSMQ GQSLLGCSPP RNSSQLGSFS STHKGKGQSP LHKVFNSPTY QYIQPDTLSL PPLDSLLDDY QRDGVGASSY PMMKIPAVGI SGASSLAQYL
201: DMPITIHPTA LDLPLQNTWR FSGPVSESSA TGGSQLTQEK DMYQMGSMSS TASLSQQLQE EHQQEQQLQQ KQQQLQEIQN PNHGLMVPHP LGSEQEHDSG
301: LQLVHFLLAC AEAVAKEDYM LARRYLHHLN RVVTPLGDSM QRVASCFTEA LSARLAATLT PKPSTSTTKP FNPFPPNSLE ILKIYQILYQ ACPYIKFAHF
401: TANQAIFEAF EAEERVHVID LDILQGYQWP AFIQALAARP GGAPFLRITG VGCSPESVRE TGRCLTELAH SLHVPFEFHP VGEELEDLKP HMFNRRVGEA
501: LAVNSANRLH RVPTNFLGNL LAMIRDQAPN IVTIVEQEAS HNGPYFLGRF LEALHYYSAI FDSLDATFPP DSAQRAKLEQ YIFAPVIRNI VACEGAERVM
601: RHERLEKWRK LMEGKGFQGV PLSANAVTQS KILLGLYSCD GYRLTEDKGC LLLGWQDRAI LAASAWRC

Best Arabidopsis Sequence Match ( AT1G66350.1 )
(BLAST)

001: MKREHNHRES SAGEGGSSSM TTVIKEEAAG VDELLVVLGY KVRSSDMADV AHKLEQLEMV LGDGISNLSD ETVHYNPSDL SGWVESMLSD LDPTRIQEKP
101: DSEYDLRAIP GSAVYPRDEH VTRRSKRTRI ESELSSTRSV VVLDSQETGV RLVHALLACA EAVQQNNLKL ADALVKHVGL LASSQAGAMR KVATYFAEGL
201: ARRIYRIYPR DDVALSSFSD TLQIHFYESC PYLKFAHFTA NQAILEVFAT AEKVHVIDLG LNHGLQWPAL IQALALRPNG PPDFRLTGIG YSLTDIQEVG
301: WKLGQLASTI GVNFEFKSIA LNNLSDLKPE MLDIRPGLES VAVNSVFELH RLLAHPGSID KFLSTIKSIR PDIMTVVEQE ANHNGTVFLD RFTESLHYYS
401: SLFDSLEGPP SQDRVMSELF LGRQILNLVA CEGEDRVERH ETLNQWRNRF GLGGFKPVSI GSNAYKQASM LLALYAGADG YNVEENEGCL LLGWQTRPLI
501: ATSAWRINRV E

Arabidopsis Description

RGL1DELLA protein RGL1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C8Y3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.