Factsheet for PGSC0003DMT400052191

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU83473	Sorghum	cytosol	69.6	61.85
Solyc02g094340.1.1	Tomato	nucleus	99.2	54.71
VIT_14s0068g01610.t01	Wine grape	plastid	89.6	50.3
KRG94590	Soybean	plastid	82.93	45.67
KRH06900	Soybean	plastid	82.93	45.34
GSMUA_Achr6P20830_001	Banana	nucleus	66.13	40.66
TraesCS2D01G095300.1	Wheat	nucleus	68.8	36.08
PGSC0003DMT400030652	Potato	cytosol	39.47	36.01
TraesCS2B01G112100.1	Wheat	nucleus	68.53	35.94
TraesCS2A01G096800.1	Wheat	nucleus	68.53	35.94
PGSC0003DMT400057265	Potato	nucleus, plastid	40.0	34.8
PGSC0003DMT400023877	Potato	cytosol	37.33	33.98
Zm00001d049249_P001	Maize	plastid	69.6	33.68
PGSC0003DMT400011839	Potato	cytosol	40.27	32.27
PGSC0003DMT400058477	Potato	cytosol	39.2	31.14
PGSC0003DMT400039455	Potato	cytosol	42.13	29.64
PGSC0003DMT400049448	Potato	nucleus	37.6	27.65
PGSC0003DMT400040589	Potato	nucleus	43.2	27.55
PGSC0003DMT400087504	Potato	nucleus	34.93	26.95
PGSC0003DMT400049445	Potato	cytosol	28.0	24.94
PGSC0003DMT400038574	Potato	cytosol	36.8	22.59
PGSC0003DMT400007879	Potato	plastid	37.6	20.77
PGSC0003DMT400043358	Potato	cytosol	41.33	18.77

Protein Annotations

EnsemblPlants:PGSC0003DMT400052191	EnsemblPlantsGene:PGSC0003DMG400020243	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR005202	InterPro:TF_GRAS	PANTHER:PTHR31636
PANTHER:PTHR31636:SF3	PFAM:PF03514	PFscan:PS50985	PGSC:PGSC0003DMG400020243	SEG:seg	UniParc:UPI000294968B
UniProt:M1BSY5	MapMan:11.6.2.2	MapMan:15.5.12	MapMan:26.9.2.1	MapMan:26.9.2.3	:

Description

GRAS family transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400020243]

Coordinates

chr2:+:48123826..48125190

Molecular Weight (calculated)

41887.5 Da

IEP (calculated)

6.782

GRAVY (calculated)

-0.074

Length

375 amino acids

Sequence
(BLAST)

001: MQDQDSGLQL VHLLLACAEA VSKEDYMLAR RYLHHLNRVV TPIGDSMQRV ASCFTEALTA RLAATLATKP STSVPKPFNP FPPNSLEILK IYQILYQACP
101: YVKFAHFTAN QAIFEAFEAE ERVHVIDLDI LQGYQWPAFM QALAARPGGA PFLRITGVGS SPEAVRETGR CLTELAQSLH VPFEFHPVGE QLEDLKAHMF
201: NRRIGEALAV NSVNRLHRVP GNCIGNLLGM IRDQAPNIVT IVEQEASHNG PYFLGRFLEA LHYYSAIFDS LDATFPGDSS QRAKLEQYIF GPEIMNIVSC
301: EGMERMVRHE RLEKWRRVME GKGFKGVALS ANAVTQSKIL LGLYSCDGYK LTEDNGCLLL GWQDRAILAA SAWRC

Best Arabidopsis Sequence Match ( AT3G54220.1 )
(BLAST)

001: MAESGDFNGG QPPPHSPLRT TSSGSSSSNN RGPPPPPPPP LVMVRKRLAS EMSSNPDYNN SSRPPRRVSH LLDSNYNTVT PQQPPSLTAA ATVSSQPNPP
101: LSVCGFSGLP VFPSDRGGRN VMMSVQPMDQ DSSSSSASPT VWVDAIIRDL IHSSTSVSIP QLIQNVRDII FPCNPNLGAL LEYRLRSLML LDPSSSSDPS
201: PQTFEPLYQI SNNPSPPQQQ QQHQQQQQQH KPPPPPIQQQ ERENSSTDAP PQPETVTATV PAVQTNTAEA LRERKEEIKR QKQDEEGLHL LTLLLQCAEA
301: VSADNLEEAN KLLLEISQLS TPYGTSAQRV AAYFSEAMSA RLLNSCLGIY AALPSRWMPQ THSLKMVSAF QVFNGISPLV KFSHFTANQA IQEAFEKEDS
401: VHIIDLDIMQ GLQWPGLFHI LASRPGGPPH VRLTGLGTSM EALQATGKRL SDFADKLGLP FEFCPLAEKV GNLDTERLNV RKREAVAVHW LQHSLYDVTG
501: SDAHTLWLLQ RLAPKVVTVV EQDLSHAGSF LGRFVEAIHY YSALFDSLGA SYGEESEERH VVEQQLLSKE IRNVLAVGGP SRSGEVKFES WREKMQQCGF
601: KGISLAGNAA TQATLLLGMF PSDGYTLVDD NGTLKLGWKD LSLLTASAWT PRS

Arabidopsis Description

SCRProtein SCARECROW [Source:UniProtKB/Swiss-Prot;Acc:Q9M384]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.