Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc09g066450.1.1 | Tomato | cytosol | 93.62 | 91.0 |
| VIT_07s0005g03700.t01 | Wine grape | cytosol | 69.75 | 69.61 |
| KRH19587 | Soybean | cytosol | 65.02 | 60.08 |
| KRH32212 | Soybean | cytosol | 64.2 | 58.1 |
| PGSC0003DMT400030652 | Potato | cytosol | 35.39 | 41.85 |
| TraesCS1B01G314500.1 | Wheat | peroxisome | 38.48 | 40.56 |
| HORVU1Hr1G069140.1 | Barley | cytosol | 38.48 | 40.04 |
| EES18409 | Sorghum | cytosol | 40.53 | 39.96 |
| Zm00001d038518_P001 | Maize | cytosol | 40.53 | 39.64 |
| TraesCS1D01G303500.1 | Wheat | peroxisome | 39.09 | 38.93 |
| TraesCS1A01G304000.1 | Wheat | peroxisome | 39.09 | 38.7 |
| Os05t0485400-00 | Rice | peroxisome | 38.68 | 37.6 |
| PGSC0003DMT400052191 | Potato | cytosol | 26.95 | 34.93 |
| PGSC0003DMT400023877 | Potato | cytosol | 24.9 | 29.37 |
| PGSC0003DMT400057265 | Potato | nucleus, plastid | 25.51 | 28.77 |
| PGSC0003DMT400043358 | Potato | cytosol | 44.03 | 25.91 |
| PGSC0003DMT400011839 | Potato | cytosol | 24.9 | 25.85 |
| PGSC0003DMT400058477 | Potato | cytosol | 25.1 | 25.85 |
| PGSC0003DMT400049448 | Potato | nucleus | 24.9 | 23.73 |
| PGSC0003DMT400040589 | Potato | nucleus | 27.78 | 22.96 |
| PGSC0003DMT400038574 | Potato | cytosol | 27.98 | 22.26 |
| PGSC0003DMT400007879 | Potato | plastid | 30.86 | 22.09 |
| PGSC0003DMT400049445 | Potato | cytosol | 18.72 | 21.62 |
| PGSC0003DMT400039455 | Potato | cytosol | 23.66 | 21.58 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400087504 | EnsemblPlantsGene:PGSC0003DMG400037075 | EntrezGene:102605980 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR005202 | InterPro:TF_GRAS |
| PANTHER:PTHR31636 | PANTHER:PTHR31636:SF22 | PFAM:PF03514 | PFscan:PS50985 | PGSC:PGSC0003DMG400037075 | RefSeq:XP_006351691.1 |
| SEG:seg | UniParc:UPI000296F683 | UniProt:M1DDZ6 | MapMan:15.5.12 | : | : |
Description
GRAS family transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400037075]
Coordinates
chr9:-:49967579..49969039
Molecular Weight (calculated)
54529.8 Da
IEP (calculated)
6.391
GRAVY (calculated)
-0.334
Length
486 amino acids
Sequence
(BLAST)
(BLAST)
001: MMKGESELIH QHTPLDQPNE QWDYCAPNHP SKTLITENRA NNPDQRNELS QWVEQVTRQL IEDLPENETE VGLQTSGTST MTPALLGELR PKKIARRNSS
101: EDIGEHQQQQ QHQWNSNTHD DQGLNLITLL LECAVAISVD NLGEAHRMLL ELTQMASPYG PSCAERVVAY FAKAMASRVI NSWLGICSPL INYKSVHTAF
201: QAFNNISPFI KFAHFTSNQA ILEAFHRRDR VHIIDVDIMQ GLQWPALFHI LATRMEGPPH VTMTGIGTSM ELLIETGKQL SSFAKRLGMS FEFHPIGGKT
301: GEIDISTFKI SRGEAIAIHW VQHSLYDATG PDWKTMKLLQ QLSPRVVTLV EQEIALGGSF LDRFVGSLHY YSTIFDSLGA FLESDDSSRH SVEHGLLYRE
401: INNILAIGGP ARNGEDKFRH WRSELSKNGF IQVPMSTNSM AQAQLILNMF PPAHGYSLVQ GDGTLRLGWK DTSLFTASAW TSPNSR
101: EDIGEHQQQQ QHQWNSNTHD DQGLNLITLL LECAVAISVD NLGEAHRMLL ELTQMASPYG PSCAERVVAY FAKAMASRVI NSWLGICSPL INYKSVHTAF
201: QAFNNISPFI KFAHFTSNQA ILEAFHRRDR VHIIDVDIMQ GLQWPALFHI LATRMEGPPH VTMTGIGTSM ELLIETGKQL SSFAKRLGMS FEFHPIGGKT
301: GEIDISTFKI SRGEAIAIHW VQHSLYDATG PDWKTMKLLQ QLSPRVVTLV EQEIALGGSF LDRFVGSLHY YSTIFDSLGA FLESDDSSRH SVEHGLLYRE
401: INNILAIGGP ARNGEDKFRH WRSELSKNGF IQVPMSTNSM AQAQLILNMF PPAHGYSLVQ GDGTLRLGWK DTSLFTASAW TSPNSR
001: MAESGDFNGG QPPPHSPLRT TSSGSSSSNN RGPPPPPPPP LVMVRKRLAS EMSSNPDYNN SSRPPRRVSH LLDSNYNTVT PQQPPSLTAA ATVSSQPNPP
101: LSVCGFSGLP VFPSDRGGRN VMMSVQPMDQ DSSSSSASPT VWVDAIIRDL IHSSTSVSIP QLIQNVRDII FPCNPNLGAL LEYRLRSLML LDPSSSSDPS
201: PQTFEPLYQI SNNPSPPQQQ QQHQQQQQQH KPPPPPIQQQ ERENSSTDAP PQPETVTATV PAVQTNTAEA LRERKEEIKR QKQDEEGLHL LTLLLQCAEA
301: VSADNLEEAN KLLLEISQLS TPYGTSAQRV AAYFSEAMSA RLLNSCLGIY AALPSRWMPQ THSLKMVSAF QVFNGISPLV KFSHFTANQA IQEAFEKEDS
401: VHIIDLDIMQ GLQWPGLFHI LASRPGGPPH VRLTGLGTSM EALQATGKRL SDFADKLGLP FEFCPLAEKV GNLDTERLNV RKREAVAVHW LQHSLYDVTG
501: SDAHTLWLLQ RLAPKVVTVV EQDLSHAGSF LGRFVEAIHY YSALFDSLGA SYGEESEERH VVEQQLLSKE IRNVLAVGGP SRSGEVKFES WREKMQQCGF
601: KGISLAGNAA TQATLLLGMF PSDGYTLVDD NGTLKLGWKD LSLLTASAWT PRS
101: LSVCGFSGLP VFPSDRGGRN VMMSVQPMDQ DSSSSSASPT VWVDAIIRDL IHSSTSVSIP QLIQNVRDII FPCNPNLGAL LEYRLRSLML LDPSSSSDPS
201: PQTFEPLYQI SNNPSPPQQQ QQHQQQQQQH KPPPPPIQQQ ERENSSTDAP PQPETVTATV PAVQTNTAEA LRERKEEIKR QKQDEEGLHL LTLLLQCAEA
301: VSADNLEEAN KLLLEISQLS TPYGTSAQRV AAYFSEAMSA RLLNSCLGIY AALPSRWMPQ THSLKMVSAF QVFNGISPLV KFSHFTANQA IQEAFEKEDS
401: VHIIDLDIMQ GLQWPGLFHI LASRPGGPPH VRLTGLGTSM EALQATGKRL SDFADKLGLP FEFCPLAEKV GNLDTERLNV RKREAVAVHW LQHSLYDVTG
501: SDAHTLWLLQ RLAPKVVTVV EQDLSHAGSF LGRFVEAIHY YSALFDSLGA SYGEESEERH VVEQQLLSKE IRNVLAVGGP SRSGEVKFES WREKMQQCGF
601: KGISLAGNAA TQATLLLGMF PSDGYTLVDD NGTLKLGWKD LSLLTASAWT PRS
Arabidopsis Description
SCRProtein SCARECROW [Source:UniProtKB/Swiss-Prot;Acc:Q9M384]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.