Factsheet for PGSC0003DMT400049445

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400049448	Potato	nucleus	75.53	62.35
Solyc10g086370.1.1	Tomato	nucleus	70.31	58.04
PGSC0003DMT400040589	Potato	nucleus	47.74	34.18
PGSC0003DMT400052191	Potato	cytosol	24.94	28.0
PGSC0003DMT400023877	Potato	cytosol	19.71	20.15
PGSC0003DMT400057265	Potato	nucleus, plastid	20.43	19.95
PGSC0003DMT400030652	Potato	cytosol	18.76	19.22
PGSC0003DMT400087504	Potato	nucleus	21.62	18.72
PGSC0003DMT400011839	Potato	cytosol	19.0	17.09
PGSC0003DMT400039455	Potato	cytosol	20.67	16.32
PGSC0003DMT400058477	Potato	cytosol	17.81	15.89
PGSC0003DMT400038574	Potato	cytosol	21.62	14.89
PGSC0003DMT400007879	Potato	plastid	23.28	14.43
PGSC0003DMT400043358	Potato	cytosol	24.7	12.59

Protein Annotations

MapMan:11.6.2.2	MapMan:15.5.12	GO:GO:0000989	GO:GO:0003674	GO:GO:0003712	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR005202	UniProt:M1BNR8
PFAM:PF03514	EnsemblPlantsGene:PGSC0003DMG400019210	PGSC:PGSC0003DMG400019210	EnsemblPlants:PGSC0003DMT400049445	PFscan:PS50985	PANTHER:PTHR31636
PANTHER:PTHR31636:SF47	InterPro:TF_DELLA	InterPro:TF_GRAS	UniParc:UPI0002960483	SEG:seg	:

Description

DELLA domain GRAS family transcription factor rga [Source:PGSC_GENE;Acc:PGSC0003DMG400019210]

Coordinates

chr10:-:51393772..51395480

Molecular Weight (calculated)

46754.0 Da

IEP (calculated)

4.250

GRAVY (calculated)

-0.105

Length

421 amino acids

Sequence
(BLAST)

001: MSSPEMSMET IVEDEDSFVS DTDAIIYATT DISGWTHSLI SDHNIPNSLS STSVDENNHN QQISTAAGGD DDSMIASSSA SSNWLTNNKQ IDVQQEIRIF
101: NVDFRALCNN TCGGSEFRGG LLPDTDRTVN QETLITTLMA CAEAIHENNL SLADVLISDI RRVTASQIGG AMKKVATYFA DALYYKIHRL IPQDIVESSY
201: SKDQLLHMSF YDSCLLVKIA HFTASQSTLE IFADYKRVHV IDFSLNQGWH WPALLQTLAL RPGGPPAFRL SGIGGQPQPD DSTDPLQEVG FKLAQFAESV
301: GVEFEFRGFM AHTLADLEAL MLNIRPSNVE VVAVNSVFEL LRVFSIPGAI EKVLDLINEI EPKIVTIAEQ EANHNWSVFI NRISEGWHYY STMFDLLENA
401: DSINPNTLDI VMAEQYLGRE I

Best Arabidopsis Sequence Match ( AT2G01570.1 )
(BLAST)

001: MKRDHHQFQG RLSNHGTSSS SSSISKDKMM MVKKEEDGGG NMDDELLAVL GYKVRSSEMA EVALKLEQLE TMMSNVQEDG LSHLATDTVH YNPSELYSWL
101: DNMLSELNPP PLPASSNGLD PVLPSPEICG FPASDYDLKV IPGNAIYQFP AIDSSSSSNN QNKRLKSCSS PDSMVTSTST GTQIGGVIGT TVTTTTTTTT
201: AAGESTRSVI LVDSQENGVR LVHALMACAE AIQQNNLTLA EALVKQIGCL AVSQAGAMRK VATYFAEALA RRIYRLSPPQ NQIDHCLSDT LQMHFYETCP
301: YLKFAHFTAN QAILEAFEGK KRVHVIDFSM NQGLQWPALM QALALREGGP PTFRLTGIGP PAPDNSDHLH EVGCKLAQLA EAIHVEFEYR GFVANSLADL
401: DASMLELRPS DTEAVAVNSV FELHKLLGRP GGIEKVLGVV KQIKPVIFTV VEQESNHNGP VFLDRFTESL HYYSTLFDSL EGVPNSQDKV MSEVYLGKQI
501: CNLVACEGPD RVERHETLSQ WGNRFGSSGL APAHLGSNAF KQASMLLSVF NSGQGYRVEE SNGCLMLGWH TRPLITTSAW KLSTAAY

Arabidopsis Description

RGADELLA protein RGA [Source:UniProtKB/Swiss-Prot;Acc:Q9SLH3]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.