Factsheet for PGSC0003DMT400030652

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
endoplasmic reticulum 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, endoplasmic reticulum, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400014123
PGSC0003DMT400018569
PGSC0003DMT400046278
PGSC0003DMT400054299
PGSC0003DMT400055239
PGSC0003DMT400058435
PGSC0003DMT400070437
PGSC0003DMT400097662

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G41920.1	PGSC0003DMT400014123	AT2G41100.1	17360592
AT5G41920.1	PGSC0003DMT400018569	AT2G41100.1	17360592
AT5G41920.1	PGSC0003DMT400046278	AT2G41100.1	17360592
AT5G41920.1	PGSC0003DMT400054299	AT2G41100.1	17360592
AT5G41920.1	PGSC0003DMT400058435	AT2G41100.1	17360592
AT5G41920.1	PGSC0003DMT400070437	AT2G41100.1	17360592
AT5G41920.1	PGSC0003DMT400097662	AT2G41100.1	17360592
AT5G41920.1	PGSC0003DMT400055239	AT4G37650.1	18500650

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g043330.1.1	Tomato	plastid	97.08	92.36
VIT_03s0017g01660.t01	Wine grape	plastid	73.97	68.78
KRH29089	Soybean	mitochondrion	71.29	66.29
Bra025456.1-P	Field mustard	mitochondrion	39.66	66.26
CDY64484	Canola	mitochondrion	39.66	66.26
KRH24117	Soybean	plastid	68.86	63.6
AT5G41920.1	Thale cress	cytosol	61.31	62.22
CDY27670	Canola	cytosol	58.88	59.9
GSMUA_Achr4P23590_001	Banana	cytosol, mitochondrion, nucleus, plastid	44.53	59.42
Os07t0567700-02	Rice	cytosol	65.69	59.08
TraesCS2D01G208500.1	Wheat	cytosol	63.75	58.35
TraesCS2B01G228000.1	Wheat	cytosol	63.75	58.35
TraesCS2A01G200700.1	Wheat	cytosol	63.5	58.0
Zm00001d021826_P001	Maize	cytosol	63.75	57.96
KXG36498	Sorghum	cytosol, plastid	63.99	57.17
HORVU0Hr1G003230.2	Barley	mitochondrion	60.1	53.35
PGSC0003DMT400052191	Potato	cytosol	36.01	39.47
PGSC0003DMT400087504	Potato	nucleus	41.85	35.39
PGSC0003DMT400057265	Potato	nucleus, plastid	30.9	29.47
PGSC0003DMT400023877	Potato	cytosol	29.2	29.13
PGSC0003DMT400058477	Potato	cytosol	33.09	28.81
PGSC0003DMT400011839	Potato	cytosol	31.87	27.99
PGSC0003DMT400043358	Potato	cytosol	54.99	27.36
PGSC0003DMT400039455	Potato	cytosol	33.58	25.89
PGSC0003DMT400049448	Potato	nucleus	27.49	22.16
PGSC0003DMT400040589	Potato	nucleus	31.39	21.94
PGSC0003DMT400007879	Potato	plastid	33.58	20.32
PGSC0003DMT400038574	Potato	cytosol	28.95	19.48
PGSC0003DMT400049445	Potato	cytosol	19.22	18.76

Protein Annotations

EnsemblPlants:PGSC0003DMT400030652	EnsemblPlantsGene:PGSC0003DMG400011742	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR005202	InterPro:TF_GRAS	PANTHER:PTHR31636
PANTHER:PTHR31636:SF35	PFAM:PF03514	PFscan:PS50985	PGSC:PGSC0003DMG400011742	SEG:seg	UniParc:UPI0002963AC2
UniProt:M1AUK9	MapMan:15.5.12	:	:	:	:

Description

DELLA protein RGA [Source:PGSC_GENE;Acc:PGSC0003DMG400011742]

Coordinates

chr7:-:41596561..41598227

Molecular Weight (calculated)

45619.7 Da

IEP (calculated)

4.912

GRAVY (calculated)

-0.048

Length

411 amino acids

Sequence
(BLAST)

001: MSSKRSIVEF TPVSDEPQLL TKRPRNEEEE EEGEELVLVD ADSIGLRLLG LLLQCAEFVA MENLDEAANL LPEIAELSSP FGSSAERVAA YFAESLSARI
101: ISSHLRFYSP LNLKSLTLTH SQKLFTALQS YNTISPLIKF SHYTANQAIY QALEGEDHVH VIDLDIMQGL QWPGLFQILS SRSRKLRSIK ITGVGSSMEL
201: LESTGRRLTE FANSFGLPFE FQPFEGKIGH ITDLNQLGVK IGETTVVNWM HHCLYDITGS DLGTFRLLTL LRPKLITLVE QDLSHGGNFL GRFVEALHYY
301: SALFDALGDG LSEESVERHT VEQQLFSSEI RNIVAVGGPK RTGEVPVERW GVEMKRIGFL PVSLSGTPAA QASLLLGMFP RGYTLVDENG CLKLGWKDLS
401: LLTASAWQPC D

Best Arabidopsis Sequence Match ( AT5G41920.1 )
(BLAST)

001: MTTKRIDRDL PSSDDPSSAK RRIEFPEETL ENDGAAAIKL LSLLLQCAEY VATDHLREAS TLLSEISEIC SPFGSSPERV VAYFAQALQT RVISSYLSGA
101: CSPLSEKPLT VVQSQKIFSA LQTYNSVSPL IKFSHFTANQ AIFQALDGED SVHIIDLDVM QGLQWPALFH ILASRPRKLR SIRITGFGSS SDLLASTGRR
201: LADFASSLNL PFEFHPIEGI IGNLIDPSQL ATRQGEAVVV HWMQHRLYDV TGNNLETLEI LRRLKPNLIT VVEQELSYDD GGSFLGRFVE ALHYYSALFD
301: ALGDGLGEES GERFTVEQIV LGTEIRNIVA HGGGRRKRMK WKEELSRVGF RPVSLRGNPA TQAGLLLGML PWNGYTLVEE NGTLRLGWKD LSLLTASAWK
401: SQPFD

Arabidopsis Description

SCL23Scarecrow-like protein 23 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHZ1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.