Factsheet for PGSC0003DMT400023877

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g017100.1.1	Tomato	cytosol	95.15	82.35
VIT_18s0076g00200.t01	Wine grape	cytosol	56.07	70.86
KRH34954	Soybean	cytosol	61.16	62.22
KRG91825	Soybean	nucleus	60.92	53.98
KRH08555	Soybean	cytosol	60.68	53.08
KRH70202	Soybean	cytosol	60.19	52.1
GSMUA_Achr10P...	Banana	nucleus	49.03	46.01
GSMUA_Achr6P17870_001	Banana	cytosol	49.76	45.96
OQU81603	Sorghum	cytosol	32.52	37.43
PGSC0003DMT400052191	Potato	cytosol	33.98	37.33
HORVU0Hr1G004640.1	Barley	mitochondrion, nucleus, plastid	41.02	35.28
TraesCS2A01G304000.1	Wheat	cytosol, mitochondrion, nucleus	40.05	34.38
TraesCS2B01G320700.1	Wheat	cytosol, mitochondrion, nucleus	40.29	34.16
Zm00001d025133_P001	Maize	cytosol	40.78	34.01
TraesCS2D01G302600.1	Wheat	cytosol, mitochondrion, nucleus	39.81	33.88
Zm00001d003657_P001	Maize	cytosol, mitochondrion, nucleus	40.29	33.33
Os04t0432100-00	Rice	nucleus	40.05	32.74
PGSC0003DMT400030652	Potato	cytosol	29.13	29.2
PGSC0003DMT400057265	Potato	nucleus, plastid	27.43	26.22
PGSC0003DMT400011839	Potato	cytosol	28.64	25.21
PGSC0003DMT400058477	Potato	cytosol	28.64	25.0
PGSC0003DMT400087504	Potato	nucleus	29.37	24.9
PGSC0003DMT400039455	Potato	cytosol	29.37	22.7
PGSC0003DMT400049448	Potato	nucleus	26.46	21.37
PGSC0003DMT400040589	Potato	nucleus	28.16	19.73
PGSC0003DMT400049445	Potato	cytosol	20.15	19.71
PGSC0003DMT400038574	Potato	cytosol	28.64	19.31
PGSC0003DMT400007879	Potato	plastid	26.94	16.35
PGSC0003DMT400043358	Potato	cytosol	31.07	15.5

Protein Annotations

EnsemblPlants:PGSC0003DMT400023877	EnsemblPlantsGene:PGSC0003DMG400009233	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR005202	InterPro:TF_GRAS	PANTHER:PTHR31636
PANTHER:PTHR31636:SF19	PFAM:PF03514	PFscan:PS50985	PGSC:PGSC0003DMG400009233	UniParc:UPI00029623E8	UniProt:M1AJ34
MapMan:15.5.12	:	:	:	:	:

Description

GRAS family transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400009233]

Coordinates

chr11:+:8991422..8992660

Molecular Weight (calculated)

46995.4 Da

IEP (calculated)

6.097

GRAVY (calculated)

-0.205

Length

412 amino acids

Sequence
(BLAST)

001: MMLKNDVKKK GHIVVEDGKG LHLIHSLLIS ATSIDENTID LAIENLHELY QNVTLFGDSI QRMAAYFADG LIARLLTRKS PFYDMIMKPP TQEEEFLAFT
101: QFYKVSPFYQ FAHFTANQAI LEVFEKELEY NNGLLHVIDF FDISYGFQWP SLIQSLSENA TTLNRISLKI TGYGKTIDEL RETETRLVSF AKGFRNLSFE
201: FQGVLSGSYK LSNLTKRKNE TLAINLMFHL NSLSTYSKIS KTLKEVHDLC PSIVTIVEQE GCKIPQTFMP RFMDSLHYFA AMFDSLDDCL PIDSIERLSI
301: EKNHLGKEIK NVLNYDEGGN NNNSSRYDDN EQMETCKGRM ESHGFLGIPL SCKNIMQAKL LMKIRSYSNS TIQIDGGING GFRVFEIEDP RAISLAWQDR
401: SIVTASAWHC VL

Best Arabidopsis Sequence Match ( AT2G04890.1 )
(BLAST)

001: MDNVRGSIML QPLPEIAESI DDAICHELSM WPDDAKDLLL IVEAISRGDL KLVLVACAKA VSENNLLMAR WCMGELRGMV SISGEPIQRL GAYMLEGLVA
101: RLAASGSSIY KSLQSREPES YEFLSYVYVL HEVCPYFKFG YMSANGAIAE AMKDEERIHI IDFQIGQGSQ WIALIQAFAA RPGGAPNIRI TGVGDGSVLV
201: TVKKRLEKLA KKFDVPFRFN AVSRPSCEVE VENLDVRDGE ALGVNFAYML HHLPDESVSM ENHRDRLLRM VKSLSPKVVT LVEQECNTNT SPFLPRFLET
301: LSYYTAMFES IDVMLPRNHK ERINIEQHCM ARDVVNIIAC EGAERIERHE LLGKWKSRFS MAGFEPYPLS SIISATIRAL LRDYSNGYAI EERDGALYLG
401: WMDRILVSSC AWK

Arabidopsis Description

SCL21SCL21 [Source:UniProtKB/TrEMBL;Acc:A0A178VWV4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.