Factsheet for VIT_18s0076g00200.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH34954	Soybean	cytosol	79.14	63.7
PGSC0003DMT400023877	Potato	cytosol	70.86	56.07
KRG91825	Soybean	nucleus	78.53	55.05
KRH08555	Soybean	cytosol	77.91	53.93
KRH70202	Soybean	cytosol	76.07	52.1
Solyc11g017100.1.1	Tomato	cytosol	70.25	48.11
GSMUA_Achr6P17870_001	Banana	cytosol	58.9	43.05
GSMUA_Achr10P...	Banana	nucleus	57.36	42.6
OQU81603	Sorghum	cytosol	35.89	32.68
HORVU0Hr1G004640.1	Barley	mitochondrion, nucleus, plastid	46.63	31.73
TraesCS2A01G304000.1	Wheat	cytosol, mitochondrion, nucleus	46.01	31.25
Zm00001d025133_P001	Maize	cytosol	47.24	31.17
TraesCS2B01G320700.1	Wheat	cytosol, mitochondrion, nucleus	46.32	31.07
TraesCS2D01G302600.1	Wheat	cytosol, mitochondrion, nucleus	45.4	30.58
Zm00001d003657_P001	Maize	cytosol, mitochondrion, nucleus	46.63	30.52
Os04t0432100-00	Rice	nucleus	46.01	29.76
VIT_03s0017g01660.t01	Wine grape	plastid	32.21	23.76
VIT_19s0015g01930.t01	Wine grape	cytosol	29.75	23.49
VIT_07s0005g03700.t01	Wine grape	cytosol	30.67	20.53
VIT_11s0016g04630.t01	Wine grape	plastid	33.44	20.49
VIT_17s0000g10300.t01	Wine grape	nucleus	31.9	20.04
VIT_13s0019g01220.t01	Wine grape	cytosol	29.14	19.87
VIT_01s0011g05260.t01	Wine grape	cytosol	34.36	18.98
VIT_14s0006g00640.t01	Wine grape	cytosol	33.13	18.98
VIT_06s0009g02390.t01	Wine grape	cytosol	27.3	18.78
VIT_14s0068g01610.t01	Wine grape	plastid	36.5	17.81
VIT_19s0085g00540.t01	Wine grape	cytosol	28.83	17.74
VIT_02s0025g04000.t01	Wine grape	plastid	33.74	16.77
VIT_04s0023g01660.t01	Wine grape	cytosol	28.83	15.33
VIT_08s0056g00050.t01	Wine grape	nucleus	35.58	14.83

Protein Annotations

MapMan:15.5.12	ProteinID:CBI18535	ProteinID:CBI18535.3	UniProt:D7SSA3	EMBL:FN594974	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:IPR005202	PFAM:PF03514
PFscan:PS50985	PANTHER:PTHR31636	PANTHER:PTHR31636:SF19	InterPro:TF_GRAS	UniParc:UPI0001BE1348	ArrayExpress:VIT_18s0076g00200
EnsemblPlantsGene:VIT_18s0076g00200	EnsemblPlants:VIT_18s0076g00200.t01	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr18:-:15784878..15786089

Molecular Weight (calculated)

37140.3 Da

IEP (calculated)

6.011

GRAVY (calculated)

-0.208

Length

326 amino acids

Sequence
(BLAST)

001: MREQMLKLDH KRKGVVEDGK GLHLIHLLLI TATAVDENNV SVAAENLREL YQSVCLNGDS VQRVVAYFAD GLAAKLLTRK SPFYDMIMKE PTPEEEFLAH
101: TDLYRVSPYY QFAHFTANQA IIEAFEEEEE NNNRALHVVD FDVSYGFQWP SLIQSLAEKA TSGNRISLRI TGFGRSLDEL QETETRLISF SKAFRNLVFE
201: FQGLLRGSKL TNLRKKKNET VAANLVFHLN TLTSFLKISE TLKSVHSLNP SIVILVEQEG SRSPQSFLSR FMESLHYFAA MFDSLDDCLP LEKSGGFRVF
301: ERDDERAISL GWQDRCLITA SAWHCI

Best Arabidopsis Sequence Match ( AT2G01570.1 )
(BLAST)

001: MKRDHHQFQG RLSNHGTSSS SSSISKDKMM MVKKEEDGGG NMDDELLAVL GYKVRSSEMA EVALKLEQLE TMMSNVQEDG LSHLATDTVH YNPSELYSWL
101: DNMLSELNPP PLPASSNGLD PVLPSPEICG FPASDYDLKV IPGNAIYQFP AIDSSSSSNN QNKRLKSCSS PDSMVTSTST GTQIGGVIGT TVTTTTTTTT
201: AAGESTRSVI LVDSQENGVR LVHALMACAE AIQQNNLTLA EALVKQIGCL AVSQAGAMRK VATYFAEALA RRIYRLSPPQ NQIDHCLSDT LQMHFYETCP
301: YLKFAHFTAN QAILEAFEGK KRVHVIDFSM NQGLQWPALM QALALREGGP PTFRLTGIGP PAPDNSDHLH EVGCKLAQLA EAIHVEFEYR GFVANSLADL
401: DASMLELRPS DTEAVAVNSV FELHKLLGRP GGIEKVLGVV KQIKPVIFTV VEQESNHNGP VFLDRFTESL HYYSTLFDSL EGVPNSQDKV MSEVYLGKQI
501: CNLVACEGPD RVERHETLSQ WGNRFGSSGL APAHLGSNAF KQASMLLSVF NSGQGYRVEE SNGCLMLGWH TRPLITTSAW KLSTAAY

Arabidopsis Description

RGADELLA protein RGA [Source:UniProtKB/Swiss-Prot;Acc:Q9SLH3]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.