Factsheet for VIT_19s0085g00540.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH13057	Soybean	cytosol	58.68	56.04
KRH44884	Soybean	cytosol	44.34	54.27
VIT_17s0000g10300.t01	Wine grape	nucleus	34.34	35.07
VIT_19s0015g01930.t01	Wine grape	cytosol	23.96	30.75
VIT_06s0009g02390.t01	Wine grape	cytosol	26.23	29.32
VIT_03s0017g01660.t01	Wine grape	plastid	24.15	28.96
VIT_18s0076g00200.t01	Wine grape	cytosol	17.74	28.83
VIT_13s0019g01220.t01	Wine grape	cytosol	25.85	28.66
VIT_11s0016g04630.t01	Wine grape	plastid	27.92	27.82
VIT_14s0006g00640.t01	Wine grape	cytosol	29.25	27.24
VIT_01s0011g05260.t01	Wine grape	cytosol	29.62	26.61
VIT_07s0005g03700.t01	Wine grape	cytosol	24.15	26.28
VIT_14s0068g01610.t01	Wine grape	plastid	31.7	25.15
VIT_02s0025g04000.t01	Wine grape	plastid	26.98	21.8
VIT_04s0023g01660.t01	Wine grape	cytosol	21.89	18.92
VIT_08s0056g00050.t01	Wine grape	nucleus	26.04	17.65

Protein Annotations

EntrezGene:100262121	wikigene:100262121	MapMan:15.5.12	MapMan:26.9.2.3	UniProt:A5B006	EMBL:AM441941
ProteinID:CAN65103	ProteinID:CAN65103.1	ProteinID:CCB48994	ProteinID:CCB48994.1	EMBL:FN595503	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:IPR005202	EntrezGene:LOC100262121
wikigene:LOC100262121	PFAM:PF03514	PFscan:PS50985	PANTHER:PTHR31636	PANTHER:PTHR31636:SF30	InterPro:TF_GRAS
UniParc:UPI000151FD5F	ArrayExpress:VIT_19s0085g00540	EnsemblPlantsGene:VIT_19s0085g00540	EnsemblPlants:VIT_19s0085g00540.t01	RefSeq:XP_002263234	RefSeq:XP_002263234.2
RefSeq:XP_010645115.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr19:+:22922082..22923674

Molecular Weight (calculated)

58657.7 Da

IEP (calculated)

4.773

GRAVY (calculated)

-0.298

Length

530 amino acids

Sequence
(BLAST)

001: MAAMNAWLSF PSNTESFNHE LAIRRFCPAR IEQEQGGGEW EDGMNEIDQP WSPYNAVSPP CLAASEEDEF VDSFINMDGY NDYGNDDNKA LESQQGFDHN
101: FQGDEAIEMF EMVDEGYEDA GMVVEGEDLG GGTDLMPSME EVSHGVDQGL QLVHSLLACA EAVGCRDTQL ADSMLSRIWR SANCYGDSLQ RVSYCFAMGL
201: KSRLLHLRNV NANGTFANGR MAVSSINKEE KMEAFQLLHQ TTPYIAFGFM AANEAILKTG KGNDSLHIID LGMEHCLQWP SLIRTLAQEP EGPPKLRITG
301: LVKDGDSLSG LKASLKELAE YAATMGVPLQ LNTVSDPATP AFLTKESLDV REGEVLFVNS IMHLHKYVKE SRGSLKAVLQ AIKKLGPTLV TVVEQDANHN
401: GPFFLGRFLE SLHYYSAIFD SLEASLPRSS PQRMKIERGH FGEEIRNIVA FEGSERIERH ERADQWRRQL GRAGFQVVGM KSMSQARMML SVYGCDGYSL
501: ACEKGCLLLG WKGKPIMLAS AWQVAKASSS

Best Arabidopsis Sequence Match ( AT1G66350.1 )
(BLAST)

001: MKREHNHRES SAGEGGSSSM TTVIKEEAAG VDELLVVLGY KVRSSDMADV AHKLEQLEMV LGDGISNLSD ETVHYNPSDL SGWVESMLSD LDPTRIQEKP
101: DSEYDLRAIP GSAVYPRDEH VTRRSKRTRI ESELSSTRSV VVLDSQETGV RLVHALLACA EAVQQNNLKL ADALVKHVGL LASSQAGAMR KVATYFAEGL
201: ARRIYRIYPR DDVALSSFSD TLQIHFYESC PYLKFAHFTA NQAILEVFAT AEKVHVIDLG LNHGLQWPAL IQALALRPNG PPDFRLTGIG YSLTDIQEVG
301: WKLGQLASTI GVNFEFKSIA LNNLSDLKPE MLDIRPGLES VAVNSVFELH RLLAHPGSID KFLSTIKSIR PDIMTVVEQE ANHNGTVFLD RFTESLHYYS
401: SLFDSLEGPP SQDRVMSELF LGRQILNLVA CEGEDRVERH ETLNQWRNRF GLGGFKPVSI GSNAYKQASM LLALYAGADG YNVEENEGCL LLGWQTRPLI
501: ATSAWRINRV E

Arabidopsis Description

RGL1DELLA protein RGL1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C8Y3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.