Factsheet for VIT_08s0056g00050.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0011g05230.t01
VIT_01s0026g01530.t01
VIT_02s0025g04650.t01
VIT_04s0008g02780.t01
VIT_04s0069g00830.t01
VIT_05s0029g01570.t01
VIT_06s0004g03220.t01
VIT_06s0004g03240.t01
VIT_07s0129g00030.t01
VIT_08s0040g02100.t01
VIT_08s0040g02330.t01
VIT_08s0056g00050.t01
VIT_09s0002g09040.t01
VIT_10s0116g00190.t01
VIT_12s0028g03030.t01
VIT_13s0019g03920.t01
VIT_18s0001g14270.t01
VIT_18s0041g00420.t01
VIT_19s0014g04110.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54220.1	VIT_12s0028g03030.t01	AT1G03840.1	17785527
AT3G54220.1	VIT_06s0004g03220.t01	AT1G07920.1	19228333
AT3G54220.1	VIT_06s0004g03240.t01	AT1G07920.1	19228333
AT3G54220.1	VIT_08s0040g02330.t01	AT1G07920.1	19228333
AT3G54220.1	VIT_13s0019g03920.t01	AT1G07920.1	19228333
AT3G54220.1	VIT_19s0014g04110.t01	AT1G07920.1	19228333
AT3G54220.1	VIT_06s0004g03220.t01	AT1G07930.1	19228333
AT3G54220.1	VIT_06s0004g03240.t01	AT1G07930.1	19228333
AT3G54220.1	VIT_08s0040g02330.t01	AT1G07930.1	19228333
AT3G54220.1	VIT_13s0019g03920.t01	AT1G07930.1	19228333
AT3G54220.1	VIT_19s0014g04110.t01	AT1G07930.1	19228333
AT3G54220.1	VIT_01s0026g01530.t01	AT1G27050.1	19228333
AT3G54220.1	VIT_10s0116g00190.t01	AT1G62360.1	17785527
AT3G54220.1	VIT_05s0029g01570.t01	AT1G72160.1	19228333
AT3G54220.1	VIT_09s0002g09040.t01	AT1G72160.1	19228333
AT3G54220.1	VIT_18s0041g00420.t01	AT1G72160.1	19228333
AT3G54220.1	VIT_18s0001g14270.t01	AT1G75750.1	19228333
AT3G54220.1	VIT_04s0069g00830.t01	AT1G78570.1	19228333
AT3G54220.1	VIT_01s0011g05230.t01	AT2G01540.1	19228333
AT3G54220.1	VIT_04s0008g02780.t01	AT3G12280.1	22921914
AT3G54220.1	VIT_08s0056g00050.t01	AT3G54220.1	17785527
AT3G54220.1	VIT_02s0025g04650.t01	AT4G11880.1	19228333
AT3G54220.1	VIT_07s0129g00030.t01	AT4G37650.1	17446396
AT3G54220.1	VIT_07s0129g00030.t01	AT4G37650.1	17785527
AT3G54220.1	VIT_07s0129g00030.t01	AT4G37650.1	18500650
AT3G54220.1	VIT_07s0129g00030.t01	AT4G37650.1	22921914
AT3G54220.1	VIT_08s0040g02100.t01	AT5G03150.1	17785527

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra007056.1-P	Field mustard	mitochondrion, plastid	35.29	87.34
KXG22896	Sorghum	cytosol, plasma membrane	46.42	68.88
GSMUA_Achr11P...	Banana	plastid	50.13	68.29
CDX78219	Canola	nucleus, plastid	52.17	67.66
CDX73496	Canola	nucleus, plastid	53.07	66.72
HORVU5Hr1G045920.2	Barley	cytosol	47.31	63.25
AT3G54220.1	Thale cress	nucleus, plastid	52.81	63.25
TraesCS4A01G191300.1	Wheat	cytosol	49.49	62.72
Os11t0124300-01	Rice	nucleus, plastid	50.77	60.98
TraesCS5B01G143100.1	Wheat	plastid	49.49	60.66
Os12t0122000-01	Rice	plastid	51.15	60.61
TraesCS5A01G144000.1	Wheat	plastid	49.74	60.03
Zm00001d052380_P001	Maize	plastid	51.15	59.88
GSMUA_Achr8P09400_001	Banana	cytosol	51.41	59.82
TraesCS5D01G148000.1	Wheat	plastid	49.87	59.72
Solyc10g074680.1.1	Tomato	cytosol	62.15	58.84
PGSC0003DMT400043358	Potato	cytosol	61.51	58.23
TraesCS4D01G122000.1	Wheat	plastid	50.51	58.17
TraesCS4B01G124000.1	Wheat	plastid	50.38	58.03
GSMUA_Achr5P21440_001	Banana	nucleus, plastid	51.92	57.43
OQU82754	Sorghum	plastid	51.53	56.68
Zm00001d005029_P001	Maize	plastid	48.98	56.49
KRH40615	Soybean	nucleus, plastid	59.08	56.14
VIT_03s0017g01660.t01	Wine grape	plastid	31.33	55.43
KRH00551	Soybean	nucleus, plastid	59.21	54.99
VIT_07s0005g03700.t01	Wine grape	cytosol	27.11	43.53
VIT_19s0015g01930.t01	Wine grape	cytosol	19.18	36.32
VIT_18s0076g00200.t01	Wine grape	cytosol	14.83	35.58
VIT_13s0019g01220.t01	Wine grape	cytosol	19.31	31.59
VIT_06s0009g02390.t01	Wine grape	cytosol	18.41	30.38
VIT_14s0006g00640.t01	Wine grape	cytosol	21.74	29.88
VIT_11s0016g04630.t01	Wine grape	plastid	20.08	29.51
VIT_01s0011g05260.t01	Wine grape	cytosol	21.1	27.97
VIT_17s0000g10300.t01	Wine grape	nucleus	18.54	27.94
VIT_14s0068g01610.t01	Wine grape	plastid	23.53	27.54
VIT_19s0085g00540.t01	Wine grape	cytosol	17.65	26.04
VIT_02s0025g04000.t01	Wine grape	plastid	20.72	24.7
VIT_04s0023g01660.t01	Wine grape	cytosol	16.88	21.53

Protein Annotations

EntrezGene:100265598	wikigene:100265598	MapMan:15.5.12	MapMan:26.3.1.5	ProteinID:CCB55927	ProteinID:CCB55927.1
UniProt:F6HMQ2	EMBL:FN595995	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008356
GO:GO:0009058	GO:GO:0009605	GO:GO:0009606	GO:GO:0009628	GO:GO:0009630	GO:GO:0009956
GO:GO:0009987	GO:GO:0030154	GO:GO:0043565	GO:GO:0048366	GO:GO:0051457	GO:GO:0090610
InterPro:IPR005202	EntrezGene:LOC100265598	wikigene:LOC100265598	PFAM:PF03514	PFscan:PS50985	PANTHER:PTHR31636
PANTHER:PTHR31636:SF12	InterPro:TF_GRAS	UniParc:UPI0001983AA5	ArrayExpress:VIT_08s0056g00050	EnsemblPlantsGene:VIT_08s0056g00050	EnsemblPlants:VIT_08s0056g00050.t01
RefSeq:XP_002264349	RefSeq:XP_002264349.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr8:-:115793..118526

Molecular Weight (calculated)

84661.7 Da

IEP (calculated)

6.568

GRAVY (calculated)

-0.305

Length

782 amino acids

Sequence
(BLAST)

001: MAAACALLGD NGREMDANGS AGASLTPLTS TSISSGCDQL NHHFQRAKMV RKRTASEVEL QTGSYHRFSR RPITAMNPNP LHDMGGGGSS LSFPSNNISS
101: RDDNSNSNSA TPNSTHVPNH STISPCSTNS TVTSSTNLAY IDTLAPLPQP PAVCGFSGLP LFPPERNRNT SGTLASAAFL PAPAVPPLTP PSMEDTTATA
201: WIDGILKDLI HSSTNVPIPQ LIQNVREIIH PCNPNLASIL EYRLRSLTDP NPIPNYPERR RKDGPPVGLP RAYQQQGQVQ VSSSSGLKLY LDSGLDNLHY
301: SLPDSAASHV MNHYLNWGLT QPPTTTADGQ AQHLSDHQAS PSSVAPVLSL NQVHPPQPAQ PQQPQNSPQS AEPAGAAATI TTAPTSAAIV TKEKKEETRQ
401: QKRDEEGLHL LTLLLQCAEA VSADNFEEAN KMLLEISELS TPFGTSAQRV AAYFSEAMSA RLVSSCLGIY ATLPTVPHSQ KLVSAFQVFN GISPFVKFSH
501: FTANQAIQEA FEREERVHII DLDIMQGLQW PGLFHILASR PGGPPFVRLT GLGTSMEALE ATGKRLTDFA EKLGLPFEFF PVAEKVGNLD PERLNVSKRE
601: AVAVHWLQHS LYDVTGSDTN TLWLLQRLAP KVVTVVEQDL SHAGSFLGRF VEAIHYYSAL FDSLGASYGE ESEQRHAVEQ QLLSREIRNV LAVGGPSRSG
701: DVKFNNWREK LQQSGFRVVS LAGNAATQAT LLLGMFPSDG YTLVEDNGTL KLGWKDLCLL TASAWRPFHA AATTTPTHHY AH

Best Arabidopsis Sequence Match ( AT3G54220.1 )
(BLAST)

001: MAESGDFNGG QPPPHSPLRT TSSGSSSSNN RGPPPPPPPP LVMVRKRLAS EMSSNPDYNN SSRPPRRVSH LLDSNYNTVT PQQPPSLTAA ATVSSQPNPP
101: LSVCGFSGLP VFPSDRGGRN VMMSVQPMDQ DSSSSSASPT VWVDAIIRDL IHSSTSVSIP QLIQNVRDII FPCNPNLGAL LEYRLRSLML LDPSSSSDPS
201: PQTFEPLYQI SNNPSPPQQQ QQHQQQQQQH KPPPPPIQQQ ERENSSTDAP PQPETVTATV PAVQTNTAEA LRERKEEIKR QKQDEEGLHL LTLLLQCAEA
301: VSADNLEEAN KLLLEISQLS TPYGTSAQRV AAYFSEAMSA RLLNSCLGIY AALPSRWMPQ THSLKMVSAF QVFNGISPLV KFSHFTANQA IQEAFEKEDS
401: VHIIDLDIMQ GLQWPGLFHI LASRPGGPPH VRLTGLGTSM EALQATGKRL SDFADKLGLP FEFCPLAEKV GNLDTERLNV RKREAVAVHW LQHSLYDVTG
501: SDAHTLWLLQ RLAPKVVTVV EQDLSHAGSF LGRFVEAIHY YSALFDSLGA SYGEESEERH VVEQQLLSKE IRNVLAVGGP SRSGEVKFES WREKMQQCGF
601: KGISLAGNAA TQATLLLGMF PSDGYTLVDD NGTLKLGWKD LSLLTASAWT PRS

Arabidopsis Description

SCRProtein SCARECROW [Source:UniProtKB/Swiss-Prot;Acc:Q9M384]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.