Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 8
- endoplasmic reticulum 6
- vacuole 6
- plasma membrane 5
- golgi 6
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_08s0056g00050.t01 | |
| VIT_12s0028g02240.t01 | |
| VIT_18s0001g09830.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G75750.1 | VIT_12s0028g02240.t01 | AT2G42580.1 | 19000166 |
| AT1G75750.1 | VIT_18s0001g09830.t01 | AT2G42580.1 | 19000166 |
| AT1G75750.1 | VIT_08s0056g00050.t01 | AT3G54220.1 | 19228333 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY68406 | Canola | extracellular | 68.37 | 68.37 |
| CDY47499 | Canola | extracellular | 67.35 | 67.35 |
| CDX73193 | Canola | extracellular | 67.35 | 67.35 |
| Bra008222.1-P | Field mustard | extracellular | 66.33 | 66.33 |
| CDY44046 | Canola | extracellular | 66.33 | 66.33 |
| CDY39057 | Canola | extracellular | 66.33 | 66.33 |
| CDX85912 | Canola | extracellular | 66.33 | 66.33 |
| PGSC0003DMT400004046 | Potato | extracellular | 69.39 | 65.38 |
| CDY13540 | Canola | extracellular | 65.31 | 65.31 |
| AT1G75750.1 | Thale cress | extracellular | 64.29 | 64.29 |
| CDY65245 | Canola | extracellular | 64.29 | 63.64 |
| Solyc01g111080.2.1 | Tomato | nucleus | 67.35 | 63.46 |
| CDY30303 | Canola | extracellular | 65.31 | 63.37 |
| Bra038550.1-P | Field mustard | extracellular | 65.31 | 63.37 |
| Bra029227.1-P | Field mustard | extracellular | 63.27 | 62.63 |
| KRH05956 | Soybean | extracellular | 63.27 | 62.63 |
| AT2G18420.1 | Thale cress | extracellular | 59.18 | 61.7 |
| KRH17433 | Soybean | extracellular | 62.24 | 61.62 |
| KRH51705 | Soybean | extracellular | 60.2 | 59.0 |
| KRH61042 | Soybean | extracellular | 58.16 | 57.0 |
| TraesCS1D01G270300.1 | Wheat | extracellular | 52.04 | 55.43 |
| TraesCS1A01G270100.1 | Wheat | extracellular | 50.0 | 53.26 |
| TraesCS1D01G270100.1 | Wheat | extracellular | 48.98 | 52.17 |
| HORVU1Hr1G074530.1 | Barley | extracellular | 48.98 | 52.17 |
| VIT_18s0072g01120.t01 | Wine grape | mitochondrion | 38.78 | 51.35 |
| Zm00001d010193_P001 | Maize | extracellular | 48.98 | 51.06 |
| AT4G09600.1 | Thale cress | extracellular | 51.02 | 50.51 |
| KXG21918 | Sorghum | extracellular | 48.98 | 50.0 |
| Os05t0432200-00 | Rice | extracellular | 46.94 | 50.0 |
| EES13089 | Sorghum | extracellular | 56.12 | 49.55 |
| CDX90726 | Canola | extracellular | 50.0 | 49.49 |
| EES18282 | Sorghum | extracellular | 47.96 | 49.47 |
| CDY05065 | Canola | extracellular | 48.98 | 47.52 |
| AT4G09610.1 | Thale cress | extracellular | 47.96 | 47.47 |
| VIT_01s0026g00620.t01 | Wine grape | extracellular | 51.02 | 46.3 |
| PGSC0003DMT400075426 | Potato | extracellular | 48.98 | 42.48 |
| Solyc12g089300.1.1 | Tomato | extracellular | 46.94 | 41.07 |
| HORVU1Hr1G074580.1 | Barley | extracellular | 48.98 | 41.03 |
| VIT_18s0072g01110.t01 | Wine grape | extracellular | 45.92 | 40.18 |
| VIT_14s0066g01790.t01 | Wine grape | cytosol | 44.9 | 14.77 |
Protein Annotations
| EntrezGene:100266028 | wikigene:100266028 | MapMan:11.10.2.1.1 | ProteinID:CBI19861 | ProteinID:CBI19861.3 | UniProt:E0CQ56 |
| EMBL:FN595227 | InterPro:GASA | EntrezGene:LOC100266028 | wikigene:LOC100266028 | PFAM:PF02704 | PANTHER:PTHR23201 |
| PANTHER:PTHR23201:SF39 | SignalP:SignalP-noTM | TIGR:TC57964 | TIGR:TC59512 | TIGR:TC60166 | UniParc:UPI00015C766C |
| ArrayExpress:VIT_18s0001g14270 | EnsemblPlantsGene:VIT_18s0001g14270 | EnsemblPlants:VIT_18s0001g14270.t01 | unigene:Vvi.25153 | unigene:Vvi.6630 | RefSeq:XP_002275694 |
| RefSeq:XP_002275694.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr18:-:12276091..12276597
Molecular Weight (calculated)
10228.3 Da
IEP (calculated)
8.151
GRAVY (calculated)
-0.109
Length
98 amino acids
Sequence
(BLAST)
(BLAST)
1: MAISKTLIAS LLISLLVYQI TEAATTSGDG ASSPTEKMDC GGACSARCRL SSRPNLCNRA CGTCCARCNC VPPGTSGNQE ICPCYANMTT RGNERKCP
1: MAISKALIAS LLISLLVLQL VQADVENSQK KNGYAKKIDC GSACVARCRL SRRPRLCHRA CGTCCYRCNC VPPGTYGNYD KCQCYASLTT HGGRRKCP
Arabidopsis Description
GASA1GASA1 [Source:UniProtKB/TrEMBL;Acc:A0A178W4S5]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.