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Wine grape
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • extracellular 2
  • endoplasmic reticulum 2
  • vacuole 3
  • plasma membrane 2
  • golgi 2
  • cytosol 2
  • peroxisome 1
PPI

Inferred distinct locusB in Crop

locusBlocations
VIT_01s0011g06410.t01

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G14920.1 VIT_01s0011g06410.t01 AT2G01950.1 19000166
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS2B01G346900.1 Wheat extracellular 17.79 49.53
TraesCS2D01G327800.1 Wheat extracellular 17.45 48.6
TraesCS2A01G319900.1 Wheat extracellular 17.45 48.6
KRH18589 Soybean extracellular 29.53 48.35
VIT_01s0026g00620.t01 Wine grape extracellular 17.45 48.15
TraesCS2A01G333600.1 Wheat extracellular 17.11 47.66
GSMUA_Achr7P19950_001 Banana extracellular 18.46 47.41
VIT_18s0072g01120.t01 Wine grape mitochondrion 11.74 47.3
KRG93396 Soybean extracellular 30.87 46.46
Os04t0465300-01 Rice extracellular 16.11 45.71
Zm00001d003380_P001 Maize extracellular 17.45 45.22
VIT_18s0001g14270.t01 Wine grape extracellular 14.77 44.9
CDY72537 Canola plastid 16.44 43.36
OQU81731 Sorghum extracellular 16.11 42.86
VIT_18s0072g01110.t01 Wine grape extracellular 14.77 39.29
Bra006273.1-P Field mustard endoplasmic reticulum, extracellular, plasma membrane, plastid 32.21 37.5
CDY31392 Canola extracellular 29.87 35.6
CDY09898 Canola extracellular 29.87 35.6
AT5G14920.1 Thale cress extracellular 28.86 31.27
Protein Annotations
EntrezGene:100259439wikigene:100259439MapMan:11.10.2.1.1ProteinID:CBI34969ProteinID:CBI34969.3UniProt:D7TWU4
EMBL:FN596252InterPro:GASAGO:GO:0005575GO:GO:0005623GO:GO:0005886GO:GO:0006950
GO:GO:0008150GO:GO:0008152GO:GO:0009628GO:GO:0009651GO:GO:0009719GO:GO:0009737
GO:GO:0009739GO:GO:0009987GO:GO:0016020GO:GO:2000377EntrezGene:LOC100259439wikigene:LOC100259439
PFAM:PF02704PRINTS:PR01217PANTHER:PTHR23201PANTHER:PTHR23201:SF38TIGR:TC55527UniParc:UPI0001BE405A
ArrayExpress:VIT_14s0066g01790EnsemblPlantsGene:VIT_14s0066g01790EnsemblPlants:VIT_14s0066g01790.t01unigene:Vvi.14282RefSeq:XP_002280219RefSeq:XP_002280219.1
SEG:seg:::::
Description
No Description!
Coordinates
chr14:+:28107504..28110935
Molecular Weight (calculated)
31833.6 Da
IEP (calculated)
10.112
GRAVY (calculated)
-0.230
Length
298 amino acids
Sequence
(BLAST)
001: MDLFIGHLTE FHGNLSSILD LILEREKQVK KTELHRYLSP ILNHILERGV NYLQLLTPGL FFSPCSAMAL KILLLLLASY LLVTKRVSAN DEEFGVQATY
101: AKAPVPAPVK TPIPAPPVKP PTVTPNPPAP VVKPPTVVPK PPAPPVSPPT VAPKPPAPVV PKPPTPPANP PTVAPKPPAP PVKPPTVVPK PPSPPVNPPT
201: PKPPASPVKP PTVAPKPPVP PVTPPTTAPM PPVRARLDCI PLCDQRCKAH SRKNICVRAC MTCCDRCKCV PPGTYGNREK CGKCYTDMTT HGNKPKCP
Best Arabidopsis Sequence Match ( AT5G14920.1 )
(BLAST)
001: MALSLLSVFI FFHVFTNVVF AASNEESNAL VSLPTPTLPS PSPATKPPSP ALKPPTPSYK PPTLPTTPIK PPTTKPPVKP PTIPVTPVKP PVSTPPIKLP
101: PVQPPTYKPP TPTVKPPSVQ PPTYKPPTPT VKPPTTSPVK PPTTPPVQSP PVQPPTYKPP TSPVKPPTTT PPVKPPTTTP PVQPPTYNPP TTPVKPPTAP
201: PVKPPTPPPV RTRIDCVPLC GTRCGQHSRK NVCMRACVTC CYRCKCVPPG TYGNKEKCGS CYANMKTRGG KSKCP
Arabidopsis Description
GASA14Gibberellin-regulated protein 14 [Source:UniProtKB/Swiss-Prot;Acc:Q9LFR3]
SUBAcon: [extracellular]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.