Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 2
- endoplasmic reticulum 2
- vacuole 3
- plasma membrane 2
- golgi 2
- cytosol 2
- peroxisome 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
locusB | locations |
---|---|
VIT_01s0011g06410.t01 |
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT5G14920.1 | VIT_01s0011g06410.t01 | AT2G01950.1 | 19000166 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
TraesCS2B01G346900.1 | Wheat | extracellular | 17.79 | 49.53 |
TraesCS2D01G327800.1 | Wheat | extracellular | 17.45 | 48.6 |
TraesCS2A01G319900.1 | Wheat | extracellular | 17.45 | 48.6 |
KRH18589 | Soybean | extracellular | 29.53 | 48.35 |
VIT_01s0026g00620.t01 | Wine grape | extracellular | 17.45 | 48.15 |
TraesCS2A01G333600.1 | Wheat | extracellular | 17.11 | 47.66 |
GSMUA_Achr7P19950_001 | Banana | extracellular | 18.46 | 47.41 |
VIT_18s0072g01120.t01 | Wine grape | mitochondrion | 11.74 | 47.3 |
KRG93396 | Soybean | extracellular | 30.87 | 46.46 |
Os04t0465300-01 | Rice | extracellular | 16.11 | 45.71 |
Zm00001d003380_P001 | Maize | extracellular | 17.45 | 45.22 |
VIT_18s0001g14270.t01 | Wine grape | extracellular | 14.77 | 44.9 |
CDY72537 | Canola | plastid | 16.44 | 43.36 |
OQU81731 | Sorghum | extracellular | 16.11 | 42.86 |
VIT_18s0072g01110.t01 | Wine grape | extracellular | 14.77 | 39.29 |
Bra006273.1-P | Field mustard | endoplasmic reticulum, extracellular, plasma membrane, plastid | 32.21 | 37.5 |
CDY31392 | Canola | extracellular | 29.87 | 35.6 |
CDY09898 | Canola | extracellular | 29.87 | 35.6 |
AT5G14920.1 | Thale cress | extracellular | 28.86 | 31.27 |
Protein Annotations
EntrezGene:100259439 | wikigene:100259439 | MapMan:11.10.2.1.1 | ProteinID:CBI34969 | ProteinID:CBI34969.3 | UniProt:D7TWU4 |
EMBL:FN596252 | InterPro:GASA | GO:GO:0005575 | GO:GO:0005623 | GO:GO:0005886 | GO:GO:0006950 |
GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009628 | GO:GO:0009651 | GO:GO:0009719 | GO:GO:0009737 |
GO:GO:0009739 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:2000377 | EntrezGene:LOC100259439 | wikigene:LOC100259439 |
PFAM:PF02704 | PRINTS:PR01217 | PANTHER:PTHR23201 | PANTHER:PTHR23201:SF38 | TIGR:TC55527 | UniParc:UPI0001BE405A |
ArrayExpress:VIT_14s0066g01790 | EnsemblPlantsGene:VIT_14s0066g01790 | EnsemblPlants:VIT_14s0066g01790.t01 | unigene:Vvi.14282 | RefSeq:XP_002280219 | RefSeq:XP_002280219.1 |
SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr14:+:28107504..28110935
Molecular Weight (calculated)
31833.6 Da
IEP (calculated)
10.112
GRAVY (calculated)
-0.230
Length
298 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLFIGHLTE FHGNLSSILD LILEREKQVK KTELHRYLSP ILNHILERGV NYLQLLTPGL FFSPCSAMAL KILLLLLASY LLVTKRVSAN DEEFGVQATY
101: AKAPVPAPVK TPIPAPPVKP PTVTPNPPAP VVKPPTVVPK PPAPPVSPPT VAPKPPAPVV PKPPTPPANP PTVAPKPPAP PVKPPTVVPK PPSPPVNPPT
201: PKPPASPVKP PTVAPKPPVP PVTPPTTAPM PPVRARLDCI PLCDQRCKAH SRKNICVRAC MTCCDRCKCV PPGTYGNREK CGKCYTDMTT HGNKPKCP
101: AKAPVPAPVK TPIPAPPVKP PTVTPNPPAP VVKPPTVVPK PPAPPVSPPT VAPKPPAPVV PKPPTPPANP PTVAPKPPAP PVKPPTVVPK PPSPPVNPPT
201: PKPPASPVKP PTVAPKPPVP PVTPPTTAPM PPVRARLDCI PLCDQRCKAH SRKNICVRAC MTCCDRCKCV PPGTYGNREK CGKCYTDMTT HGNKPKCP
001: MALSLLSVFI FFHVFTNVVF AASNEESNAL VSLPTPTLPS PSPATKPPSP ALKPPTPSYK PPTLPTTPIK PPTTKPPVKP PTIPVTPVKP PVSTPPIKLP
101: PVQPPTYKPP TPTVKPPSVQ PPTYKPPTPT VKPPTTSPVK PPTTPPVQSP PVQPPTYKPP TSPVKPPTTT PPVKPPTTTP PVQPPTYNPP TTPVKPPTAP
201: PVKPPTPPPV RTRIDCVPLC GTRCGQHSRK NVCMRACVTC CYRCKCVPPG TYGNKEKCGS CYANMKTRGG KSKCP
101: PVQPPTYKPP TPTVKPPSVQ PPTYKPPTPT VKPPTTSPVK PPTTPPVQSP PVQPPTYKPP TSPVKPPTTT PPVKPPTTTP PVQPPTYNPP TTPVKPPTAP
201: PVKPPTPPPV RTRIDCVPLC GTRCGQHSRK NVCMRACVTC CYRCKCVPPG TYGNKEKCGS CYANMKTRGG KSKCP
Arabidopsis Description
GASA14Gibberellin-regulated protein 14 [Source:UniProtKB/Swiss-Prot;Acc:Q9LFR3]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.