Factsheet for Os04t0465300-01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 9
endoplasmic reticulum 5
vacuole 6
plasma membrane 6
golgi 6

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
BaCelLo:	secretory
EpiLoc:	vacuole
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	extracellular, golgi, plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

extracellular: 16905871

extracellular: 19038476
extracellular: 19226311

gfp PMID: 16905871

T Furukawa, N Sakaguchi, H Shimada

Division of Plant Biotechnology, Tissue Engineering Research Center, Tokyo University of Science, Chiba-ken, Japan.

msms PMID: 19226311 doi

WK Cho, XY Chen, H Chu, Y Rim, S Kim, ST Kim, SW Kim, ZY Park, JY Kim

Division of Applied Life Science (BK21 Program), Graduate School, Environmental Biotechnology National Core Research Center, PMBBRC, Gyeongsang National University, Jinju, Korea.

msms PMID: 19038476 doi

XY Chen, ST Kim, WK Cho, Y Rim, S Kim, SW Kim, KY Kang, ZY Park, JY Kim

Division of Applied Life Science (BK21 Program), Gyeongsang National University, Jinju 660-701, Republic of Korea.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os10t0114400-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G14920.1	Os10t0114400-01	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G333600.1	Wheat	extracellular	72.38	71.03
TraesCS2A01G319900.1	Wheat	extracellular	71.43	70.09
TraesCS2D01G327800.1	Wheat	extracellular	71.43	70.09
TraesCS2B01G346900.1	Wheat	extracellular	70.48	69.16
OQU81731	Sorghum	extracellular	64.76	60.71
Zm00001d003380_P001	Maize	extracellular	59.05	53.91
GSMUA_Achr7P19950_001	Banana	extracellular	42.86	38.79
Os05t0432200-00	Rice	extracellular	32.38	36.96
CDY72537	Canola	plastid	30.48	28.32
KRH18589	Soybean	extracellular	46.67	26.92
KRG93396	Soybean	extracellular	47.62	25.25
CDY09898	Canola	extracellular	40.0	16.8
CDY31392	Canola	extracellular	40.0	16.8
VIT_14s0066g01790.t01	Wine grape	cytosol	45.71	16.11
Bra006273.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane, plastid	37.14	15.23
AT5G14920.1	Thale cress	extracellular	36.19	13.82

Protein Annotations

EMBL:AB192575	EMBL:AK240853	EnsemblPlants:Os04t0465300-01	EnsemblPlantsGene:Os04g0465300	EntrezGene:4336089	InterPro:GASA
PANTHER:PTHR23201	PANTHER:PTHR23201:SF18	PFAM:PF02704	ProteinID:BAF14938.1	ProteinID:BAS89596.1	ProteinID:CAD40932.1
ProteinID:CAE04364.1	RefSeq:XP_015635047.1	SEG:seg	SignalP:SignalP-noTM	UniParc:UPI000004A1AB	UniProt:Q7X885
MapMan:11.10.2.1.1	:	:	:	:	:

Description

GA-stimulated transcript homolog 2, GA-stimulated transcript-related gene 2A member of the GAST (gibberellin (GA)-Stimulated Transcript) family, Cell division, Differentiation of panicles (Os04t0465300-01)

Coordinates

chr4:-:23242302..23243199

Molecular Weight (calculated)

11128.5 Da

IEP (calculated)

8.437

GRAVY (calculated)

-0.161

Length

105 amino acids

Sequence
(BLAST)

001: MAPGKLAVFA LLASLLLLNT IKAADYPPAP PLGPPPHKIV DPGKDCVGAC DARCSEHSHK KRCSRSCLTC CSACRCVPAG TAGNRETCGR CYTDWVSHNN
101: MTKCP

Best Arabidopsis Sequence Match ( AT5G14920.1 )
(BLAST)

001: MALSLLSVFI FFHVFTNVVF AASNEESNAL VSLPTPTLPS PSPATKPPSP ALKPPTPSYK PPTLPTTPIK PPTTKPPVKP PTIPVTPVKP PVSTPPIKLP
101: PVQPPTYKPP TPTVKPPSVQ PPTYKPPTPT VKPPTTSPVK PPTTPPVQSP PVQPPTYKPP TSPVKPPTTT PPVKPPTTTP PVQPPTYNPP TTPVKPPTAP
201: PVKPPTPPPV RTRIDCVPLC GTRCGQHSRK NVCMRACVTC CYRCKCVPPG TYGNKEKCGS CYANMKTRGG KSKCP

Arabidopsis Description

GASA14Gibberellin-regulated protein 14 [Source:UniProtKB/Swiss-Prot;Acc:Q9LFR3]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.