Factsheet for Bra006273.1-P

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, plastid, extracellular, plasma membrane

Predictor Summary:

extracellular 5
endoplasmic reticulum 5
vacuole 5
plasma membrane 5
golgi 4
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular, plasma membrane, plastid
Any Predictor:	plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
EpiLoc:	vacuole
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	extracellular
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra024839.1-P
Bra024840.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G14920.1	Bra024839.1-P	AT2G01950.1	19000166
AT5G14920.1	Bra024840.1-P	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY72537	Canola	plastid	25.0	56.64
Bra038550.1-P	Field mustard	extracellular	17.97	45.54
CDY31392	Canola	extracellular	42.97	44.0
GSMUA_Achr7P19950_001	Banana	extracellular	19.92	43.97
CDY09898	Canola	extracellular	42.19	43.2
Bra008222.1-P	Field mustard	extracellular	16.41	42.86
Bra029227.1-P	Field mustard	extracellular	16.41	42.42
AT5G14920.1	Thale cress	extracellular	44.14	41.09
KRG93396	Soybean	extracellular	30.86	39.9
KRH18589	Soybean	extracellular	28.12	39.56
Zm00001d003380_P001	Maize	extracellular	17.19	38.26
OQU81731	Sorghum	extracellular	16.41	37.5
TraesCS2B01G346900.1	Wheat	extracellular	15.62	37.38
TraesCS2D01G327800.1	Wheat	extracellular	15.62	37.38
Os04t0465300-01	Rice	extracellular	15.23	37.14
TraesCS2A01G319900.1	Wheat	extracellular	15.23	36.45
TraesCS2A01G333600.1	Wheat	extracellular	15.23	36.45
Bra024530.1-P	Field mustard	extracellular	15.23	32.5
VIT_14s0066g01790.t01	Wine grape	cytosol	37.5	32.21

Protein Annotations

MapMan:11.10.2.1.1	EnsemblPlantsGene:Bra006273	EnsemblPlants:Bra006273.1	EnsemblPlants:Bra006273.1-P	InterPro:GASA	GO:GO:0005575
GO:GO:0005623	GO:GO:0005886	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009628
GO:GO:0009651	GO:GO:0009719	GO:GO:0009737	GO:GO:0009739	GO:GO:0009987	GO:GO:0016020
GO:GO:2000377	UniProt:M4CPY4	PFAM:PF02704	PRINTS:PR01217	PANTHER:PTHR23201	PANTHER:PTHR23201:SF18
SignalP:SignalP-noTM	UniParc:UPI000253FBB2	SEG:seg	:	:	:

Description

AT5G14920 (E=2e-034) | gibberellin-regulated family protein

Coordinates

chrA03:+:2778795..2779988

Molecular Weight (calculated)

27192.9 Da

IEP (calculated)

10.739

GRAVY (calculated)

-0.541

Length

256 amino acids

Sequence
(BLAST)

001: MSLSLLSVFI FLQVFANVSL PTSPTSPAIK PPSPSYKPPS FPTTPIKPPT ITPPVKPPTT PVPPTSPPTY KPPTVKPPTT TPVKPPPVQP PYKPPTSPVK
101: PPTMPPVKPP PTYKPPTPPV KPPTIPPVKP PTAPVKPTPI PPYKAPPVKP TPPPPVTTPP PAKPPVNPIP SPPVNAPPVK PPYKPPTPPP VRPRINCVSL
201: CGTRCGQHSR KNVCMRACVT CCYRCKCVPP GTYGNKEKCG SCYVNMKTRG GRPKCP

Best Arabidopsis Sequence Match ( AT5G14920.1 )
(BLAST)

001: MALSLLSVFI FFHVFTNVVF AASNEESNAL VSLPTPTLPS PSPATKPPSP ALKPPTPSYK PPTLPTTPIK PPTTKPPVKP PTIPVTPVKP PVSTPPIKLP
101: PVQPPTYKPP TPTVKPPSVQ PPTYKPPTPT VKPPTTSPVK PPTTPPVQSP PVQPPTYKPP TSPVKPPTTT PPVKPPTTTP PVQPPTYNPP TTPVKPPTAP
201: PVKPPTPPPV RTRIDCVPLC GTRCGQHSRK NVCMRACVTC CYRCKCVPPG TYGNKEKCGS CYANMKTRGG KSKCP

Arabidopsis Description

GASA14Gibberellin-regulated protein 14 [Source:UniProtKB/Swiss-Prot;Acc:Q9LFR3]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.