Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 7
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 4
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d000055_P001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G14920.1 | Zm00001d000055_P001 | AT2G01950.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| OQU81731 | Sorghum | extracellular | 77.39 | 79.46 |
| TraesCS2B01G346900.1 | Wheat | extracellular | 59.13 | 63.55 |
| TraesCS2D01G327800.1 | Wheat | extracellular | 59.13 | 63.55 |
| TraesCS2A01G319900.1 | Wheat | extracellular | 57.39 | 61.68 |
| TraesCS2A01G333600.1 | Wheat | extracellular | 56.52 | 60.75 |
| Os04t0465300-01 | Rice | extracellular | 53.91 | 59.05 |
| GSMUA_Achr7P19950_001 | Banana | extracellular | 46.96 | 46.55 |
| Zm00001d010193_P001 | Maize | extracellular | 30.43 | 37.23 |
| CDY72537 | Canola | plastid | 33.91 | 34.51 |
| KRH18589 | Soybean | extracellular | 44.35 | 28.02 |
| KRG93396 | Soybean | extracellular | 44.35 | 25.76 |
| VIT_14s0066g01790.t01 | Wine grape | cytosol | 45.22 | 17.45 |
| Bra006273.1-P | Field mustard | endoplasmic reticulum, extracellular, plasma membrane, plastid | 38.26 | 17.19 |
| CDY09898 | Canola | extracellular | 33.91 | 15.6 |
| CDY31392 | Canola | extracellular | 33.91 | 15.6 |
| AT5G14920.1 | Thale cress | extracellular | 33.91 | 14.18 |
Protein Annotations
| EMBL:BT037585 | EMBL:EU954887 | EnsemblPlants:Zm00001d003380_P001 | EnsemblPlants:Zm00001d003380_T001 | EnsemblPlantsGene:Zm00001d003380 | EntrezGene:100280954 |
| InterPro:GASA | PANTHER:PTHR23201 | PANTHER:PTHR23201:SF18 | PFAM:PF02704 | ProteinID:ABF81694.1 | ProteinID:ONM16861.1 |
| SEG:seg | SignalP:SignalP-noTM | TMHMM:TMhelix | UniParc:UPI000004A19D | UniProt:Q19VG5 | MapMan:11.10.2.1.1 |
Description
cl22897_1aGibberellin-regulated protein 14
Coordinates
chr2:+:42239268..42240320
Molecular Weight (calculated)
11913.7 Da
IEP (calculated)
8.833
GRAVY (calculated)
0.093
Length
115 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPSKLAVVV ALVASLLLLT TSNTKLGLFV LGQAAPGAYP PRAPPPHQIV DLAKDCGGAC DVRCGAHSRK NICTRACLKC CGVCRCVPAG TAGNQQTCGK
101: CYTDWTTHGN KTKCP
101: CYTDWTTHGN KTKCP
001: MKKMNVVAFV TLIISFLLLS QVLAELSSSS NNETSSVSQT NDENQTAAFK RTYHHRPRIN CGHACARRCS KTSRKKVCHR ACGSCCAKCQ CVPPGTSGNT
101: ASCPCYASIR THGNKLKCP
101: ASCPCYASIR THGNKLKCP
Arabidopsis Description
GASA9Gibberellin-regulated protein 9 [Source:UniProtKB/Swiss-Prot;Acc:Q8GWK5]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.