Factsheet for VIT_04s0008g02780.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0026g00710.t01	nucleus
VIT_03s0180g00040.t01	nucleus
VIT_05s0020g04440.t01
VIT_05s0029g00050.t01	nucleus
VIT_07s0129g00200.t01	nucleus
VIT_07s0129g01100.t01	nucleus
VIT_18s0001g14110.t01	nucleus
VIT_19s0014g05210.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G12280.1	VIT_18s0001g14110.t01	AT1G47870.1	20407024
AT3G12280.1	VIT_18s0001g14110.t01	AT1G47870.1	20706207
AT3G12280.1	VIT_01s0026g00710.t01	AT1G70210.1	20407024
AT3G12280.1	VIT_19s0014g05210.t01	AT3G20740.1	15221456
AT3G12280.1	VIT_19s0014g05210.t01	AT3G20740.1	18812497
AT3G12280.1	VIT_05s0029g00050.t01	AT3G24140.1	24571519
AT3G12280.1	VIT_05s0020g04440.t01	AT3G55760.1	20706207
AT3G12280.1	VIT_03s0180g00040.t01	AT4G34160.1	20407024
AT3G12280.1	VIT_07s0129g01100.t01	AT4G34160.1	20407024
AT3G12280.1	VIT_07s0129g00200.t01	AT4G37630.1	20407024

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH13310	Soybean	nucleus	76.74	76.82
KRH20664	Soybean	nucleus	76.64	76.04
KRH63701	Soybean	nucleus	75.55	74.95
PGSC0003DMT400030280	Potato	nucleus	73.46	72.74
Solyc09g091280.2.1	Tomato	cytosol	72.96	72.1
CDY52614	Canola	cytosol	69.48	69.35
AT3G12280.1	Thale cress	nucleus	69.68	69.2
CDY08440	Canola	nucleus	69.78	69.09
Bra034764.1-P	Field mustard	nucleus	69.68	69.0
CDY50559	Canola	nucleus	69.38	68.77
CDY42141	Canola	cytosol	69.38	68.63
Bra038707.1-P	Field mustard	nucleus	69.38	68.5
GSMUA_Achr8P00470_001	Banana	nucleus	66.9	66.97
CDX73827	Canola	nucleus	66.3	65.97
Bra001446.1-P	Field mustard	nucleus	66.6	65.24
Os08t0538700-01	Rice	nucleus	63.62	63.37
EES14166	Sorghum	nucleus	62.62	62.25
Zm00001d052695_P016	Maize	nucleus	61.33	61.27
Zm00001d031678_P003	Maize	cytosol, nucleus, plastid	62.03	61.0
CDY00765	Canola	mitochondrion	67.1	60.48
TraesCS7B01G162700.4	Wheat	nucleus, plastid	60.24	59.35
TraesCS7A01G264800.1	Wheat	nucleus	60.24	59.35
VIT_14s0068g00840.t01	Wine grape	cytosol	34.49	59.01
TraesCS7D01G265600.3	Wheat	nucleus	60.04	58.7
HORVU7Hr1G055440.9	Barley	plastid	60.34	57.05
GSMUA_Achr6P08220_001	Banana	nucleus	56.56	56.84
Os11t0533500-01	Rice	nucleus	50.2	51.64
Zm00001d007407_P006	Maize	cytosol, nucleus, plastid	43.94	50.63
TraesCS4A01G143200.1	Wheat	plastid	49.11	50.36
OQU83580	Sorghum	plastid	43.24	50.12
HORVU4Hr1G039890.2	Barley	cytosol, nucleus, plastid	48.81	50.1
TraesCS4D01G159600.1	Wheat	cytosol, nucleus, plastid	48.71	49.95
TraesCS4B01G162200.1	Wheat	nucleus	48.41	49.64
CDY52391	Canola	nucleus	11.33	49.35
KXG21076	Sorghum	plastid	42.54	48.86
Zm00001d052666_P014	Maize	nucleus	43.34	47.29
KXG26019	Sorghum	cytosol	11.33	42.38

Protein Annotations

Gene3D:1.10.472.10	EntrezGene:100261011	wikigene:100261011	MapMan:13.1.2.1	ProteinID:CBI20795	ProteinID:CBI20795.3
ncoils:Coil	InterPro:Cyclin-like_sf	UniProt:D7SU46	EMBL:FN595231	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0006357
GO:GO:0007049	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0051726
PFAM:PF01857	PFAM:PF01858	PFAM:PF11934	PANTHER:PTHR13742	PANTHER:PTHR13742:SF22	EntrezGene:RBR
InterPro:RBR	wikigene:RBR	InterPro:RB_A	InterPro:RB_B	InterPro:RB_N	InterPro:RB_fam
SMART:SM01367	SMART:SM01368	SUPFAM:SSF47954	TIGR:TC67531	UniParc:UPI0001BE1C86	ArrayExpress:VIT_04s0008g02780
EnsemblPlantsGene:VIT_04s0008g02780	EnsemblPlants:VIT_04s0008g02780.t01	unigene:Vvi.17405	RefSeq:XP_002280874	RefSeq:XP_002280874.2	RefSeq:XP_010648448.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr4:-:2304896..2312291

Molecular Weight (calculated)

111622.0 Da

IEP (calculated)

8.387

GRAVY (calculated)

-0.201

Length

1006 amino acids

Sequence
(BLAST)

0001: MDGVKPVASA EQGGAVEARF TEFCKNGLQL DESTFAQAMK LFEESNHLLS TTSLSAIGNG PEDSERYWFA FILYSVKRLS EGTAENVQQG NDENGFNLCQ
0101: ILRVSKLNIV DFFKELPQFI VKVGPILGNL YGPDWEKRLE AKELQANFVH LSILSKYYKR AYLEFFSTSG SNLDKQSSVI SASGYVSDYH RFGWLLFLAL
0201: RVHAFSRFKD LVTCTNGLVS ILAILILHVP ISFRSFTINN YPRFVKKGNK GMDLLASLCD IYETSEDEVR KTMEQTNKVI VDILKKKPCL ASECKSENLA
0301: SIDPDGLVYF EDLMDESSLS SSINILEKDY DAAIRNKGEL DERVFINGED SLLGSGSLSG GAMSISGAKR KIDSLASPAK TITSPLSPNR SPGILGGANS
0401: KMAPTPVTTA MTTAKWLRTV ISPLPSKPSA ELERFLTSCD KDVTSDVIRR ANVILEAIFP SIAFGERCVT GSASLMDSIW AQQRRMEAMK LYYRVLEAMC
0501: TAEAQVLHAN NLTSLLTNER FHRCMLACSA ELVLATHKTV TMLFPAVLER TGITAFDLSK VIESFIRHEE SLPRELRRHL NSLEERLLES MVWEKGSSMY
0601: NSLIVARAAL SAEVNRLGLL AEPMPSLDAI SMHINASCGG LPPVPSLQKR ESSPGQNGDI RSPKRVCPDY RSVLVERNSF TSPVKDRFLA LNNLKSKLPP
0701: PPLQSAFASP TRPNPGREGE TCAETGINIF FSKIIKLAAV RINGMVERLQ LSQQMRENVY CLFQQILNRR TSLFFNRHID QIILCCFYGL AKISQMNLTF
0801: REIIHNYRKQ PQCKPQIFRS VFVDWSSARR NGKTGKEHVD IITFYNEIFI PAVKPLLMEI GPGGGTTTKT NRVPEVNNNN DAQCPESPKI SPFPSLPDMS
0901: PKKVSAAHNV YVSPLRSSKM DALISHSSKS YYACVGESTH AYQSPSKDLT AINNRLNSTR KLRGALNFDD VEGLVSDSLV AKSLYLQNGS CASSSGAPLK
1001: LEQPDT

Best Arabidopsis Sequence Match ( AT3G12280.2 )
(BLAST)

0001: MEEVQPPVTP PIEPNGKRSE ASLLDICEKV LSLDGSTCDE ALKLFTETKR ILSASMSNIG SGTREEVERF WFAFILYSVK RLSVRKEADG LSVSGDNEFN
0101: LCQILRALKL NIVDFFKELP QFVVKAGSVL GELYGADWEN RLQAKEVQAN FVHLSLLSKY YKRGFREFFL TYDANAEKNS ANSSTYLLDS YRFGWLLFLA
0201: LRNHAFSRFK DLVTCSNGVV SILAILIIHV PCRFRNFSIQ DSSRFVKKGD KGVDLVASLC KIYDASEDEL RIVIDKANNL VETILKKKPS PASECQTDKL
0301: DNIDPDGLTY FEDLLEETSI STSLITLEKD YYDGKGELDE RVFINEEDSL LGSGSLSAGA VNITGVKRKI DALSSPARTF ISPLSPHKSP AAKTNGISGA
0401: TKLAATPVST AMTTAKWLRT VISPLLPKPS PGLEHFLKSC DRDITNDVTR RAHIILEAIF PNSSLGAQCG GGSLQAVDLM DDIWAEQRRL EACKLYYRVL
0501: EAMCKAEAQI LHANNLNSLL TNERFHRCML ACSAELVLAT HKTITMLFPA VLERTGITAF DLSKVIESFI RHEDSLPREL RRHLNSLEER LLESMVWEKG
0601: SSMYNSLIVA RPSLALEINQ LGLLAEPMPS LDAIAALINF SDGANHASSV QKHETCPGQN GGIRSPKRLC TDYRSILVER NSFTSPVKDR LLALGNVKSK
0701: MLPPPLQSAF ASPTRPNPGG GGETCAETGI NIFFTKINKL AAVRINGMVE RLQLSQQIRE SVYCFFQHVL AQRTSLLFSR HIDQIILCCF YGVAKISQMS
0801: LTFREIIYNY RKQPQCKPLV FRSVYVDALQ CRRQGRIGPD HVDIITFYNE IFIPAVKPLL VELGPVRNDR AVEANNKPEG QCPGSPKVSV FPSVPDMSPK
0901: KVSAVHNVYV SPLRGSKMDA LISHSTKSYY ACVGESTHAY QSPSKDLSAI NNRLNNSSNR KRTLNFDAEA GMVSDSMVAN SLNLQNQNQN QNGSDASSSG
1001: GAAPLKTEPT DS

Arabidopsis Description

RBR1RBR1 [Source:UniProtKB/TrEMBL;Acc:A0A178VFS5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.