Factsheet for TraesCS4A01G143200.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
mitochondrion 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

plastid: 22160430

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G290800.1	nucleus
TraesCS1B01G300100.1	nucleus
TraesCS1D01G289400.1	nucleus
TraesCS2A01G031800.1	nucleus
TraesCS2B01G043500.1	nucleus
TraesCS2D01G031400.1	nucleus
TraesCS4A01G046900.1	nucleus
TraesCS4A01G149300.1
TraesCS4A01G234600.1	nucleus
TraesCS4A01G388400.1
TraesCS4B01G080500.1	nucleus
TraesCS4B01G158500.1
TraesCS4B01G257900.1	nucleus
TraesCS4D01G079400.1	nucleus
TraesCS4D01G257800.1	nucleus
TraesCS5A01G068600.1	nucleus
TraesCS5A01G161000.1	nucleus, nucleus
TraesCS5A01G200500.2	nucleus
TraesCS5B01G075000.1	nucleus
TraesCS5B01G158400.1	nucleus, nucleus
TraesCS5B01G199100.1	nucleus
TraesCS5D01G080600.1	nucleus
TraesCS5D01G165900.1	nucleus, nucleus
TraesCS5D01G206200.1	nucleus
TraesCS7A01G089100.1
TraesCS7A01G089200.1
TraesCS7A01G308300.1
TraesCS7A01G479000.1	nucleus
TraesCS7D01G084500.1
TraesCS7D01G305100.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G12280.1	TraesCS2A01G031800.1	AT1G47870.1	20407024
AT3G12280.1	TraesCS2B01G043500.1	AT1G47870.1	20407024
AT3G12280.1	TraesCS2D01G031400.1	AT1G47870.1	20407024
AT3G12280.1	TraesCS2A01G031800.1	AT1G47870.1	20706207
AT3G12280.1	TraesCS2B01G043500.1	AT1G47870.1	20706207
AT3G12280.1	TraesCS2D01G031400.1	AT1G47870.1	20706207
AT3G12280.1	TraesCS5A01G200500.2	AT1G70210.1	20407024
AT3G12280.1	TraesCS5B01G199100.1	AT1G70210.1	20407024
AT3G12280.1	TraesCS5D01G206200.1	AT1G70210.1	20407024
AT3G12280.1	TraesCS4A01G388400.1	AT3G20740.1	15221456
AT3G12280.1	TraesCS7A01G089100.1	AT3G20740.1	15221456
AT3G12280.1	TraesCS7A01G089200.1	AT3G20740.1	15221456
AT3G12280.1	TraesCS7A01G308300.1	AT3G20740.1	15221456
AT3G12280.1	TraesCS7D01G084500.1	AT3G20740.1	15221456
AT3G12280.1	TraesCS7D01G305100.1	AT3G20740.1	15221456
AT3G12280.1	TraesCS4A01G388400.1	AT3G20740.1	18812497
AT3G12280.1	TraesCS7A01G089100.1	AT3G20740.1	18812497
AT3G12280.1	TraesCS7A01G089200.1	AT3G20740.1	18812497
AT3G12280.1	TraesCS7A01G308300.1	AT3G20740.1	18812497
AT3G12280.1	TraesCS7D01G084500.1	AT3G20740.1	18812497
AT3G12280.1	TraesCS7D01G305100.1	AT3G20740.1	18812497
AT3G12280.1	TraesCS1A01G290800.1	AT3G24140.1	24571519
AT3G12280.1	TraesCS1B01G300100.1	AT3G24140.1	24571519
AT3G12280.1	TraesCS1D01G289400.1	AT3G24140.1	24571519
AT3G12280.1	TraesCS5A01G161000.1	AT3G50070.1	20407024
AT3G12280.1	TraesCS5B01G158400.1	AT3G50070.1	20407024
AT3G12280.1	TraesCS5D01G165900.1	AT3G50070.1	20407024
AT3G12280.1	TraesCS4A01G149300.1	AT3G55760.1	20706207
AT3G12280.1	TraesCS4B01G158500.1	AT3G55760.1	20706207
AT3G12280.1	TraesCS5A01G161000.1	AT4G34160.1	20407024
AT3G12280.1	TraesCS5B01G158400.1	AT4G34160.1	20407024
AT3G12280.1	TraesCS5D01G165900.1	AT4G34160.1	20407024
AT3G12280.1	TraesCS4A01G046900.1	AT4G37630.1	20407024
AT3G12280.1	TraesCS4A01G234600.1	AT4G37630.1	20407024
AT3G12280.1	TraesCS4B01G080500.1	AT4G37630.1	20407024
AT3G12280.1	TraesCS4B01G257900.1	AT4G37630.1	20407024
AT3G12280.1	TraesCS4D01G079400.1	AT4G37630.1	20407024
AT3G12280.1	TraesCS4D01G257800.1	AT4G37630.1	20407024
AT3G12280.1	TraesCS5A01G068600.1	AT4G37630.1	20407024
AT3G12280.1	TraesCS5B01G075000.1	AT4G37630.1	20407024
AT3G12280.1	TraesCS5D01G080600.1	AT4G37630.1	20407024
AT3G12280.1	TraesCS7A01G479000.1	AT4G37630.1	20407024

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G159600.1	Wheat	cytosol, nucleus, plastid	97.55	97.55
TraesCS4B01G162200.1	Wheat	nucleus	96.02	96.02
HORVU4Hr1G039890.2	Barley	cytosol, nucleus, plastid	93.99	94.08
Os11t0533500-01	Rice	nucleus	78.9	79.14
Zm00001d007407_P006	Maize	cytosol, nucleus, plastid	66.36	74.57
KXG26019	Sorghum	cytosol	20.18	73.61
OQU83580	Sorghum	plastid	64.53	72.93
KXG21076	Sorghum	plastid	64.42	72.15
Zm00001d052666_P014	Maize	nucleus	66.56	70.82
GSMUA_Achr6P08220_001	Banana	nucleus	51.48	50.45
VIT_04s0008g02780.t01	Wine grape	nucleus	50.36	49.11
KRH13310	Soybean	nucleus	49.95	48.76
KRH20664	Soybean	nucleus	50.15	48.52
KRH63701	Soybean	nucleus	49.75	48.13
Solyc09g091280.2.1	Tomato	cytosol	49.64	47.84
VIT_14s0068g00840.t01	Wine grape	cytosol	28.64	47.79
PGSC0003DMT400030280	Potato	nucleus	49.34	47.64
TraesCS7A01G264800.1	Wheat	nucleus	49.44	47.5
CDY50559	Canola	nucleus	49.03	47.39
AT3G12280.1	Thale cress	nucleus	48.93	47.38
CDY52614	Canola	cytosol	48.62	47.32
Bra038707.1-P	Field mustard	nucleus	49.03	47.2
CDX73827	Canola	nucleus	48.52	47.08
CDY08440	Canola	nucleus	48.52	46.85
Bra034764.1-P	Field mustard	nucleus	48.42	46.75
CDY42141	Canola	cytosol	48.01	46.31
Bra001446.1-P	Field mustard	nucleus	48.32	46.15
CDY00765	Canola	mitochondrion	48.11	42.29
CDY52391	Canola	nucleus	7.44	31.6

Protein Annotations

Gene3D:1.10.472.10	Gene3D:1.10.472.140	MapMan:13.1.2.1	InterPro:Cyclin-like_sf	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006357	GO:GO:0007049
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0051726	PFAM:PF01857
PFAM:PF01858	PFAM:PF08934	PFAM:PF11934	PANTHER:PTHR13742	PANTHER:PTHR13742:SF22	InterPro:RBR
InterPro:RB_A	InterPro:RB_B	InterPro:RB_C	InterPro:RB_N	InterPro:RB_fam	SMART:SM01367
SMART:SM01368	SUPFAM:SSF47954	EnsemblPlantsGene:TraesCS4A01G143200	EnsemblPlants:TraesCS4A01G143200.1	SEG:seg	:

Description

No Description!

Coordinates

chr4A:-:235648420..235662516

Molecular Weight (calculated)

109571.0 Da

IEP (calculated)

8.134

GRAVY (calculated)

-0.251

Length

981 amino acids

Sequence
(BLAST)

001: MERQPPPPPA VETHFADLCK ELEVDEGVAS EAAALLEEGK GVFLTSPSFG SKSPEDVERL CFAFVLYCVA KLKGKGMKQE SSRFRLWKIL EGCKLKYNDF
101: FKESQQLLSK IDHVLRGRYG TDWEDQLELK QLQSLVNLLA DASRFYCKAF NELFLSASTG QEPGSTKSNP EYFCFGWLIF LALRSKSPEL FKDLVSCIHG
201: LVAILAILLI HVPAKFRSFT IEGSSHLIKQ TVRGVDLLAS LCHNYHTSED RLREMMGKFH KAIEEFFSTK AVRASECKTE TLDKIDTDGL IYFRDLLDKE
301: CFHSNFEKLE KLSSTTSWEG ELDLKRFLIN NDNIISAENS SRDFTNLSCP KRVFETLASP TKTIKNMLTV PSSPSSPANG GSVKVVQMTP VTSAMTTAKW
401: LREVISLLPE KPSSKLEKFL SSCDTDLTSD VTKRVSIILE VIFPTKPSGH WSGSMGLNCT NAFDIPWAQA RKMEASKLYY RVLEAICRAE SLNTNVNNLT
501: PLLSNERFHR CLIACSAELV LATHKTVIMM FPAVLESTGL TAFDLSKIIE NFVRHEESLP RELKRHLNSL EEQLLESMAW EKGSSLYNSL VVARPSLASE
601: INRLGLLAES MPSLDDIVAR QNFHAEDLPA TPSKKRAAYS DENGDSRSPK RLCIEPRSTL VDQISQTPPA KQSYTLKAKW RPLQSTFASP TVSNPVGGNE
701: KCAEVGVHIF FSKILKLAAI RIRNLCERLR HVEQTERVYN IFKQILDQQT TLFFNRHIDQ LILCSLYGVA KVSQLTLTFK EIVNNYKREQ QCIPEVFRSV
801: FVVNTNHNGG LGSRHVDIIV FYNEVFVPAI KPFLVALIPS GGAHPDNKKN PNSQIPGSPK SPPFSNLPDM SPKKVSSSHN VYISPLRQTK KDALLSPSSR
901: SFYACIGEST HAYQSPSEDL AAINNCLNYT SRRINTRINF DMVSDSVVAG SLGQPNGVPA SSDPAGSFSF LSRKDNSGPD S

Best Arabidopsis Sequence Match ( AT3G12280.1 )
(BLAST)

0001: MEEVQPPVTP PIEPNGKRSE ASLLDICEKV LSLDGSTCDE ALKLFTETKR ILSASMSNIG SGTREEVERF WFAFILYSVK RLSVRKEADG LSVSGDNEFN
0101: LCQILRALKL NIVDFFKELP QFVVKAGSVL GELYGADWEN RLQAKEVQAN FVHLSLLSKY YKRGFREFFL TYDANAEKNS ANSSTYLLDS YRFGWLLFLA
0201: LRNHAFSRFK DLVTCSNGVV SILAILIIHV PCRFRNFSIQ DSSRFVKKGD KGVDLVASLC KIYDASEDEL RIVIDKANNL VETILKKKPS PASECQTDKL
0301: DNIDPDGLTY FEDLLEETSI STSLITLEKD YYDGKGELDE RVFINEEDSL LGSGSLSAGA VNITGVKRKI DALSSPARTF ISPLSPHKSP AAKTNGISGA
0401: TKLAATPVST AMTTAKWLRT VISPLLPKPS PGLEHFLKSC DRDITNDVTR RAHIILEAIF PNSSLGAQCG GGSLQAVDLM DDIWAEQRRL EACKLYYRVL
0501: EAMCKAEAQI LHANNLNSLL TNERFHRCML ACSAELVLAT HKTITMLFPA VLERTGITAF DLSKVIESFI RHEDSLPREL RRHLNSLEER LLESMVWEKG
0601: SSMYNSLIVA RPSLALEINQ LGLLAEPMPS LDAIAALINF SDGANHASSV QKHETCPGQN GGIRSPKRLC TDYRSILVER NSFTSPVKDR LLALGNVKSK
0701: MLPPPLQSAF ASPTRPNPGG GGETCAETGI NIFFTKINKL AAVRINGMVE RLQLSQQIRE SVYCFFQHVL AQRTSLLFSR HIDQIILCCF YGVAKISQMS
0801: LTFREIIYNY RKQPQCKPLV FRSVYVDALQ CRRQGRIGPD HVDIITFYNE IFIPAVKPLL VELGPVRNDR AVEANNKPEG QCPGSPKVSV FPSVPDMSPK
0901: KVSAVHNVYV SPLRGSKMDA LISHSTKSYY ACVGESTHAY QSPSKDLSAI NNRLNNSSSN RKRTLNFDAE AGMVSDSMVA NSLNLQNQNQ NQNGSDASSS
1001: GGAAPLKTEP TDS

Arabidopsis Description

RBR1RBR1 [Source:UniProtKB/TrEMBL;Acc:A0A178VFS5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.