Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- plastid 4
- cytosol 1
- nucleus 2
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7A01G308300.1 | Wheat | nucleus, plastid | 92.78 | 95.14 |
| Os08t0137100-01 | Rice | cytosol | 67.01 | 86.44 |
| Zm00001d024698_P002 | Maize | cytosol | 65.98 | 84.43 |
| HORVU7Hr1G073410.1 | Barley | cytosol | 80.62 | 82.14 |
| GSMUA_Achr5P26370_001 | Banana | cytosol | 60.21 | 79.35 |
| VIT_19s0014g05210.t01 | Wine grape | plastid | 57.73 | 75.68 |
| Solyc07g064090.2.1 | Tomato | nucleus | 56.7 | 73.92 |
| PGSC0003DMT400049479 | Potato | cytosol | 56.49 | 73.66 |
| KRH31935 | Soybean | cytosol | 57.53 | 73.04 |
| KRH71526 | Soybean | cytosol | 57.11 | 72.7 |
| TraesCS7D01G084500.1 | Wheat | plastid | 68.04 | 72.53 |
| KRH22237 | Soybean | cytosol | 54.43 | 68.57 |
| OQU79846 | Sorghum | plastid | 69.28 | 68.29 |
| AT3G20740.1 | Thale cress | cytosol | 51.34 | 67.48 |
| CDY27567 | Canola | plastid | 50.31 | 66.12 |
| CDY53612 | Canola | plastid | 50.31 | 66.12 |
| KRH27099 | Soybean | cytosol, mitochondrion, nucleus | 29.9 | 64.44 |
| CDY19607 | Canola | cytosol, nucleus, plastid | 47.63 | 58.63 |
| CDY06378 | Canola | mitochondrion | 32.37 | 58.36 |
| Os08t0137250-01 | Rice | cytosol | 55.88 | 58.15 |
| CDY19611 | Canola | plastid | 45.36 | 57.89 |
| CDY56255 | Canola | cytosol | 45.57 | 56.23 |
| Zm00001d049608_P001 | Maize | mitochondrion | 52.99 | 55.75 |
| EES13318 | Sorghum | mitochondrion | 51.55 | 55.68 |
| CDY68274 | Canola | cytosol, nucleus | 22.47 | 53.43 |
| CDY19610 | Canola | cytoskeleton, cytosol, nucleus | 30.1 | 48.99 |
| Bra041121.1-P | Field mustard | cytosol | 5.57 | 38.03 |
| CDY10986 | Canola | extracellular | 8.87 | 20.87 |
Protein Annotations
| MapMan:12.3.3.1.1.2 | Gene3D:2.130.10.10 | InterPro:G-protein_beta_WD-40_rep | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005654 | GO:GO:0006464 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016571 | GO:GO:0019538 |
| GO:GO:0035098 | InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 | PFAM:PF00400 | PRINTS:PR00320 |
| PFscan:PS50082 | PFscan:PS50294 | PANTHER:PTHR10253 | PANTHER:PTHR10253:SF5 | InterPro:Polycomb_EED | SMART:SM00320 |
| SUPFAM:SSF50978 | EnsemblPlantsGene:TraesCS7D01G305100 | EnsemblPlants:TraesCS7D01G305100.1 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_dom |
| InterPro:WD40_repeat_dom_sf | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr7D:-:386659608..386664411
Molecular Weight (calculated)
53785.0 Da
IEP (calculated)
8.514
GRAVY (calculated)
-0.342
Length
485 amino acids
Sequence
(BLAST)
(BLAST)
001: MTLTPTTCYS MSTPNDETPL MGSNGKMRYK SRRKNATTPG VDTRRRSQRR PITPAEAEAR AATFFADAAA ASRAWAERKG RGKGKGKRKA AAAEEKEAPE
101: PQPLPARMAR LGPGQGLGCE AAVGSLAPSR SREYKLCSKH TEGKRPLYAI GFNFIDARYY DVFATVGGNR VTTYRGLPDG NLAVLQAYID ADDAQSFYTL
201: SWACDLDGTP LLVAAGSNAV IRVINCATEK LFKSFLGHGD SINEIRTQPL KPSLFISASK DESVRLWNVH TGICILIFAG GGGHRNEVLS VDFHPSDIYR
301: IASCGMDNTV KIWSMKEFWP YVEKSFTWTD LPSKFPTKFV QFPLMTSVVH SNYVDCTRWL GDFILSKSVD NEIVLWEPKI KEQGPGEGSI DVLQKYPVPD
401: CDIWFIKFSC DFHFNQLAIG NREGKIYVWE VQASPPVLIT RLSSPQCKMP IRQTAVSFDG STILACGEDG SIYRWDEVEH QAAKN
101: PQPLPARMAR LGPGQGLGCE AAVGSLAPSR SREYKLCSKH TEGKRPLYAI GFNFIDARYY DVFATVGGNR VTTYRGLPDG NLAVLQAYID ADDAQSFYTL
201: SWACDLDGTP LLVAAGSNAV IRVINCATEK LFKSFLGHGD SINEIRTQPL KPSLFISASK DESVRLWNVH TGICILIFAG GGGHRNEVLS VDFHPSDIYR
301: IASCGMDNTV KIWSMKEFWP YVEKSFTWTD LPSKFPTKFV QFPLMTSVVH SNYVDCTRWL GDFILSKSVD NEIVLWEPKI KEQGPGEGSI DVLQKYPVPD
401: CDIWFIKFSC DFHFNQLAIG NREGKIYVWE VQASPPVLIT RLSSPQCKMP IRQTAVSFDG STILACGEDG SIYRWDEVEH QAAKN
001: MSKITLGNES IVGSLTPSNK KSYKVTNRIQ EGKKPLYAVV FNFLDARFFD VFVTAGGNRI TLYNCLGDGA ISALQSYADE DKEESFYTVS WACGVNGNPY
101: VAAGGVKGII RVIDVNSETI HKSLVGHGDS VNEIRTQPLK PQLVITASKD ESVRLWNVET GICILIFAGA GGHRYEVLSV DFHPSDIYRF ASCGMDTTIK
201: IWSMKEFWTY VEKSFTWTDD PSKFPTKFVQ FPVFTASIHT NYVDCNRWFG DFILSKSVDN EILLWEPQLK ENSPGEGASD VLLRYPVPMC DIWFIKFSCD
301: LHLSSVAIGN QEGKVYVWDL KSCPPVLITK LSHNQSKSVI RQTAMSVDGS TILACCEDGT IWRWDVITK
101: VAAGGVKGII RVIDVNSETI HKSLVGHGDS VNEIRTQPLK PQLVITASKD ESVRLWNVET GICILIFAGA GGHRYEVLSV DFHPSDIYRF ASCGMDTTIK
201: IWSMKEFWTY VEKSFTWTDD PSKFPTKFVQ FPVFTASIHT NYVDCNRWFG DFILSKSVDN EILLWEPQLK ENSPGEGASD VLLRYPVPMC DIWFIKFSCD
301: LHLSSVAIGN QEGKVYVWDL KSCPPVLITK LSHNQSKSVI RQTAMSVDGS TILACCEDGT IWRWDVITK
Arabidopsis Description
FIEPolycomb group protein FERTILIZATION-INDEPENDENT ENDOSPERM [Source:UniProtKB/Swiss-Prot;Acc:Q9LT47]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.