CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
cytosol 1
plastid 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra035751.1-P	Field mustard	plastid	99.21	99.47
CDY56255	Canola	cytosol	94.47	91.35
CDY53612	Canola	plastid	80.0	82.38
CDY27567	Canola	plastid	79.74	82.11
CDY19607	Canola	cytosol, nucleus, plastid	81.84	78.93
CDY06378	Canola	mitochondrion	55.0	77.7
CDY68274	Canola	cytosol, nucleus	37.11	69.12
VIT_19s0014g05210.t01	Wine grape	plastid	63.95	65.68
Solyc07g064090.2.1	Tomato	nucleus	62.63	63.98
PGSC0003DMT400049479	Potato	cytosol	62.63	63.98
KRH31935	Soybean	cytosol	63.42	63.09
GSMUA_Achr5P26370_001	Banana	cytosol	60.79	62.77
KRH71526	Soybean	cytosol	62.89	62.73
KRH22237	Soybean	cytosol	61.58	60.78
Zm00001d024698_P002	Maize	cytosol	59.74	59.89
Os08t0137100-01	Rice	cytosol	58.68	59.31
CDY19610	Canola	cytoskeleton, cytosol, nucleus	45.79	58.39
KRH27099	Soybean	cytosol, mitochondrion, nucleus	34.47	58.22
TraesCS4A01G388400.1	Wheat	cytosol, plastid	53.16	53.44
TraesCS7A01G089100.1	Wheat	cytosol	53.16	53.3
TraesCS7A01G308300.1	Wheat	nucleus, plastid	57.89	46.51
OQU79846	Sorghum	plastid	59.47	45.94
HORVU7Hr1G073410.1	Barley	cytosol	57.37	45.8
TraesCS7D01G305100.1	Wheat	nucleus, plastid	57.89	45.36
TraesCS7A01G089200.1	Wheat	cytoskeleton, cytosol, nucleus, plastid	52.89	44.18
TraesCS7D01G084500.1	Wheat	plastid	52.63	43.96
EES13318	Sorghum	mitochondrion	51.32	43.43
Os08t0137250-01	Rice	cytosol	52.89	43.13
Zm00001d049608_P001	Maize	mitochondrion	52.11	42.95
CDY10986	Canola	extracellular	11.32	20.87

Protein Annotations

MapMan:12.3.3.1.1.2	Gene3D:2.130.10.10	UniProt:A0A078G2S6	EnsemblPlants:CDY19611	ProteinID:CDY19611	ProteinID:CDY19611.1
InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016043	GO:GO:0016571	GO:GO:0019538	GO:GO:0035098	EnsemblPlantsGene:GSBRNA2T00009278001
InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	PFAM:PF00400	PRINTS:PR00320	ScanProsite:PS00678
PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR10253	PANTHER:PTHR10253:SF5	InterPro:Polycomb_EED	SMART:SM00320
SUPFAM:SSF50978	UniParc:UPI0004EEF2D0	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	:	:	:	:	:

Description

BnaA05g20190DBnaA05g20190D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G2S6]

Coordinates

chrLK032098:+:514173..516828

Molecular Weight (calculated)

42570.5 Da

IEP (calculated)

6.284

GRAVY (calculated)

-0.146

Length

380 amino acids

Sequence
(BLAST)

001: MSKIALGNES LVGSLTPSNK KSYKLTNRIQ EGKIPLYSVV FNSIDARFFN CFVSAGGNGI NLYNCLEDGG ISSLHSYTDE DKEESFYTVS WACGVEGNPF
101: VAAGGVKGII RVLNVNDKII HKTLVGHGDS VNEIKTHHMK PQLVLSTSKD ESVRLWNVET GICILIFAGT AGHRYEVVSV DFHPHDEHRF VSCGMDTTIK
201: IWSMKEFWTY VDKSFTWKDD PSKFPTKFVQ FPVFTTSVHT NYVDCNRWFG DFILSKSVEN EILLWEPQLI DNSPGEGTSD VLLRYPIPNC NLWFIKFSCD
301: LSLNYLSIGN QKGKIYVWDL KSCPPVLVTV LSHSLSKSVI RQTAMSTNGN TILAASEDGT IWRWDAVTKV ASESSQELMD

Best Arabidopsis Sequence Match ( AT3G20740.1 )
(BLAST)

001: MSKITLGNES IVGSLTPSNK KSYKVTNRIQ EGKKPLYAVV FNFLDARFFD VFVTAGGNRI TLYNCLGDGA ISALQSYADE DKEESFYTVS WACGVNGNPY
101: VAAGGVKGII RVIDVNSETI HKSLVGHGDS VNEIRTQPLK PQLVITASKD ESVRLWNVET GICILIFAGA GGHRYEVLSV DFHPSDIYRF ASCGMDTTIK
201: IWSMKEFWTY VEKSFTWTDD PSKFPTKFVQ FPVFTASIHT NYVDCNRWFG DFILSKSVDN EILLWEPQLK ENSPGEGASD VLLRYPVPMC DIWFIKFSCD
301: LHLSSVAIGN QEGKVYVWDL KSCPPVLITK LSHNQSKSVI RQTAMSVDGS TILACCEDGT IWRWDVITK

Arabidopsis Description

FIEPolycomb group protein FERTILIZATION-INDEPENDENT ENDOSPERM [Source:UniProtKB/Swiss-Prot;Acc:Q9LT47]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.