Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytosol
Predictor Summary:
Predictor Summary:
- plastid 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7A01G089100.1 | Wheat | cytosol | 93.39 | 93.14 |
| TraesCS7A01G089200.1 | Wheat | cytoskeleton, cytosol, nucleus, plastid | 92.59 | 76.92 |
| TraesCS7D01G084500.1 | Wheat | plastid | 92.06 | 76.48 |
| Os08t0137100-01 | Rice | cytosol | 74.6 | 75.0 |
| Zm00001d024698_P002 | Maize | cytosol | 74.6 | 74.41 |
| GSMUA_Achr5P26370_001 | Banana | cytosol | 67.72 | 69.57 |
| TraesCS7A01G308300.1 | Wheat | nucleus, plastid | 84.39 | 67.44 |
| VIT_19s0014g05210.t01 | Wine grape | plastid | 65.34 | 66.76 |
| HORVU7Hr1G073410.1 | Barley | cytosol | 83.86 | 66.6 |
| Solyc07g064090.2.1 | Tomato | nucleus | 64.02 | 65.05 |
| PGSC0003DMT400049479 | Potato | cytosol | 63.76 | 64.78 |
| KRH71526 | Soybean | cytosol | 64.02 | 63.52 |
| KRH31935 | Soybean | cytosol | 63.76 | 63.09 |
| AT3G20740.1 | Thale cress | cytosol | 58.73 | 60.16 |
| KRH22237 | Soybean | cytosol | 61.11 | 60.0 |
| KRH27099 | Soybean | cytosol, mitochondrion, nucleus | 35.71 | 60.0 |
| CDY53612 | Canola | plastid | 57.67 | 59.08 |
| CDY27567 | Canola | plastid | 57.67 | 59.08 |
| OQU79846 | Sorghum | plastid | 74.87 | 57.52 |
| CDY06378 | Canola | mitochondrion | 39.95 | 56.13 |
| EES13318 | Sorghum | mitochondrion | 66.4 | 55.9 |
| Os08t0137250-01 | Rice | cytosol | 68.25 | 55.36 |
| Zm00001d049608_P001 | Maize | mitochondrion | 66.4 | 54.45 |
| CDY19611 | Canola | plastid | 53.44 | 53.16 |
| CDY19607 | Canola | cytosol, nucleus, plastid | 55.03 | 52.79 |
| CDY68274 | Canola | cytosol, nucleus | 28.04 | 51.96 |
| CDY56255 | Canola | cytosol | 53.44 | 51.4 |
| CDY19610 | Canola | cytoskeleton, cytosol, nucleus | 36.24 | 45.97 |
| Bra041121.1-P | Field mustard | cytosol | 6.88 | 36.62 |
| CDY10986 | Canola | extracellular | 10.85 | 19.9 |
Protein Annotations
| MapMan:12.3.3.1.1.2 | Gene3D:2.130.10.10 | InterPro:G-protein_beta_WD-40_rep | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005654 | GO:GO:0006464 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016571 | GO:GO:0019538 |
| GO:GO:0035098 | InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 | PFAM:PF00400 | PRINTS:PR00320 |
| ScanProsite:PS00678 | PFscan:PS50082 | PFscan:PS50294 | PANTHER:PTHR10253 | PANTHER:PTHR10253:SF5 | InterPro:Polycomb_EED |
| SMART:SM00320 | SUPFAM:SSF50978 | EnsemblPlantsGene:TraesCS4A01G388400 | EnsemblPlants:TraesCS4A01G388400.1 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat |
| InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | : | : | : |
Description
No Description!
Coordinates
chr4A:-:666057584..666061533
Molecular Weight (calculated)
41954.1 Da
IEP (calculated)
6.719
GRAVY (calculated)
-0.134
Length
378 amino acids
Sequence
(BLAST)
(BLAST)
001: MASLRPVQGL GCEAAVGSLN PSGSRAFKLC SKHTEGKRPL YAIGFNFIDA RYYDVFATAG GNRVTTYRAL PDGNLAVLQA YIDPDDAQSF YTLSWASDLG
101: GTPLLVAAGS NRVIRVINCA TGKLFKSFIG HGGSINEIRT QPLKPSLLIS ASKDESVRLW NVHTGICVLI FAGGGGHRHD VLSVDFHPSD MHQIASCGMD
201: NTVKIWSMKE FEPYVKKSFT WTDLPSKFPT KVVQFPLMTC VVHSNYVDCT RWLGDFILSK SVENEIVLWE PKTKEQGHGE DSIDVLQKYP VPDCDIWFMK
301: FSCDFHFNQL AIGNRKGEIY VWDVQTCPPE LITMLSSPQC KMTIRQTAVS FDGSTILACG EDGSIYRWDE VEHQAAKN
101: GTPLLVAAGS NRVIRVINCA TGKLFKSFIG HGGSINEIRT QPLKPSLLIS ASKDESVRLW NVHTGICVLI FAGGGGHRHD VLSVDFHPSD MHQIASCGMD
201: NTVKIWSMKE FEPYVKKSFT WTDLPSKFPT KVVQFPLMTC VVHSNYVDCT RWLGDFILSK SVENEIVLWE PKTKEQGHGE DSIDVLQKYP VPDCDIWFMK
301: FSCDFHFNQL AIGNRKGEIY VWDVQTCPPE LITMLSSPQC KMTIRQTAVS FDGSTILACG EDGSIYRWDE VEHQAAKN
001: MSKITLGNES IVGSLTPSNK KSYKVTNRIQ EGKKPLYAVV FNFLDARFFD VFVTAGGNRI TLYNCLGDGA ISALQSYADE DKEESFYTVS WACGVNGNPY
101: VAAGGVKGII RVIDVNSETI HKSLVGHGDS VNEIRTQPLK PQLVITASKD ESVRLWNVET GICILIFAGA GGHRYEVLSV DFHPSDIYRF ASCGMDTTIK
201: IWSMKEFWTY VEKSFTWTDD PSKFPTKFVQ FPVFTASIHT NYVDCNRWFG DFILSKSVDN EILLWEPQLK ENSPGEGASD VLLRYPVPMC DIWFIKFSCD
301: LHLSSVAIGN QEGKVYVWDL KSCPPVLITK LSHNQSKSVI RQTAMSVDGS TILACCEDGT IWRWDVITK
101: VAAGGVKGII RVIDVNSETI HKSLVGHGDS VNEIRTQPLK PQLVITASKD ESVRLWNVET GICILIFAGA GGHRYEVLSV DFHPSDIYRF ASCGMDTTIK
201: IWSMKEFWTY VEKSFTWTDD PSKFPTKFVQ FPVFTASIHT NYVDCNRWFG DFILSKSVDN EILLWEPQLK ENSPGEGASD VLLRYPVPMC DIWFIKFSCD
301: LHLSSVAIGN QEGKVYVWDL KSCPPVLITK LSHNQSKSVI RQTAMSVDGS TILACCEDGT IWRWDVITK
Arabidopsis Description
FIEPolycomb group protein FERTILIZATION-INDEPENDENT ENDOSPERM [Source:UniProtKB/Swiss-Prot;Acc:Q9LT47]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.