Factsheet for GSMUA_Achr5P26370_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr1P24850_001
GSMUA_Achr4P31680_001
GSMUA_Achr5P02390_001
GSMUA_Achr6P08220_001
GSMUA_Achr8P00470_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G20740.1	GSMUA_Achr1P24850_001	AT1G02580.1	10962025
AT3G20740.1	GSMUA_Achr1P24850_001	AT1G02580.1	11114524
AT3G20740.1	GSMUA_Achr1P24850_001	AT1G02580.1	11148284
AT3G20740.1	GSMUA_Achr1P24850_001	AT1G02580.1	12970192
AT3G20740.1	GSMUA_Achr1P24850_001	AT1G02580.1	15456723
AT3G20740.1	GSMUA_Achr1P24850_001	AT1G02580.1	15469499
AT3G20740.1	GSMUA_Achr1P24850_001	AT1G02580.1	18812497
AT3G20740.1	GSMUA_AchrUn_...	AT2G23380.1	14871310
AT3G20740.1	GSMUA_AchrUn_...	AT2G23380.1	15456723
AT3G20740.1	GSMUA_AchrUn_...	AT2G23380.1	18812497
AT3G20740.1	GSMUA_Achr6P08220_001	AT3G12280.1	15221456
AT3G20740.1	GSMUA_Achr8P00470_001	AT3G12280.1	15221456
AT3G20740.1	GSMUA_Achr6P08220_001	AT3G12280.1	18812497
AT3G20740.1	GSMUA_Achr8P00470_001	AT3G12280.1	18812497
AT3G20740.1	GSMUA_Achr1P24850_001	AT4G02020.1	15456723
AT3G20740.1	GSMUA_Achr4P31680_001	AT5G58230.1	12970192
AT3G20740.1	GSMUA_Achr5P02390_001	AT5G58230.1	12970192
AT3G20740.1	GSMUA_Achr4P31680_001	AT5G58230.1	18812497
AT3G20740.1	GSMUA_Achr5P02390_001	AT5G58230.1	18812497

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_19s0014g05210.t01	Wine grape	plastid	87.23	86.76
KRH31935	Soybean	cytosol	84.51	81.41
KRH71526	Soybean	cytosol	84.24	81.36
PGSC0003DMT400049479	Potato	cytosol	81.79	80.91
Solyc07g064090.2.1	Tomato	nucleus	81.52	80.65
Os08t0137100-01	Rice	cytosol	82.07	80.32
Zm00001d024698_P002	Maize	cytosol	82.07	79.68
KRH22237	Soybean	cytosol	77.72	74.29
KRH27099	Soybean	cytosol, mitochondrion, nucleus	44.29	72.44
AT3G20740.1	Thale cress	cytosol	71.2	71.0
CDY53612	Canola	plastid	69.57	69.38
CDY27567	Canola	plastid	69.29	69.11
TraesCS7A01G089100.1	Wheat	cytosol	69.84	67.81
TraesCS4A01G388400.1	Wheat	cytosol, plastid	69.57	67.72
CDY06378	Canola	mitochondrion	45.11	61.71
TraesCS7A01G308300.1	Wheat	nucleus, plastid	79.08	61.52
HORVU7Hr1G073410.1	Barley	cytosol	79.35	61.34
OQU79846	Sorghum	plastid	81.52	60.98
CDY19607	Canola	cytosol, nucleus, plastid	65.22	60.91
CDY19611	Canola	plastid	62.77	60.79
TraesCS7D01G305100.1	Wheat	nucleus, plastid	79.35	60.21
CDY56255	Canola	cytosol	62.23	58.27
CDY68274	Canola	cytosol, nucleus	32.07	57.84
TraesCS7A01G089200.1	Wheat	cytoskeleton, cytosol, nucleus, plastid	69.02	55.82
TraesCS7D01G084500.1	Wheat	plastid	68.21	55.16
Os08t0137250-01	Rice	cytosol	68.21	53.86
EES13318	Sorghum	mitochondrion	64.67	53.01
Zm00001d049608_P001	Maize	mitochondrion	64.95	51.84
CDY19610	Canola	cytoskeleton, cytosol, nucleus	40.49	50.0
Bra041121.1-P	Field mustard	cytosol	8.42	43.66
CDY10986	Canola	extracellular	12.77	22.82

Protein Annotations

MapMan:12.3.3.1.1.2	Gene3D:2.130.10.10	InterPro:G-protein_beta_WD-40_rep	GO:GO:0000003	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654
GO:GO:0005677	GO:GO:0006139	GO:GO:0006349	GO:GO:0006464	GO:GO:0006950	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0009409	GO:GO:0009628	GO:GO:0009791	GO:GO:0009987
GO:GO:0016043	GO:GO:0016571	GO:GO:0019538	GO:GO:0035098	GO:GO:0040029	GO:GO:0043078
GO:GO:2000014	EnsemblPlantsGene:GSMUA_Achr5G26370_001	EnsemblPlants:GSMUA_Achr5P26370_001	EnsemblPlants:GSMUA_Achr5T26370_001	InterPro:IPR001680	InterPro:IPR015943
InterPro:IPR017986	UniProt:M0T1W2	PFAM:PF00400	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082
PFscan:PS50294	PANTHER:PTHR10253	PANTHER:PTHR10253:SF5	InterPro:Polycomb_EED	SMART:SM00320	SUPFAM:SSF50978
UniParc:UPI000295174D	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf

Description

Polycomb group protein FIE2 [Source:GMGC_GENE;Acc:GSMUA_Achr5G26370_001]

Coordinates

chr5:+:27197297..27202364

Molecular Weight (calculated)

41133.9 Da

IEP (calculated)

6.589

GRAVY (calculated)

-0.115

Length

368 amino acids

Sequence
(BLAST)

001: MAKSGLGCEP AVGSLTAARK REYKVSNRVH EGKRPLYAIA FNFIDARYYD IFATVGGNRV TVYRCLEGGL VAVLQAYVDE DKDESFYTLS WACDTDGTPF
101: LVAGGSNGII RVINAGTEKI HKSFVGHGDS VNEVRTQALK PSLVVSASKD ESVRLWNLHT GICILIFAGA GGHRNEVLSV DFHPSDIYRI ASCGMDNTVK
201: IWSMKEFWTY VEKSFTWTDL PSKFPTKYVQ FPVFIASVHS NYVDCTRWLG DFVLSKSVDN EIVLWEPKTK EQNPGEGAVD ILQKYPVPEC DIWFIKFSCD
301: FHYNAAAIGN REGKIFIWEL QSSPPVLIAR LSHAQCKSPI RQTAMSFDGS TILTCCEDGS IWRWDTVS

Best Arabidopsis Sequence Match ( AT3G20740.1 )
(BLAST)

001: MSKITLGNES IVGSLTPSNK KSYKVTNRIQ EGKKPLYAVV FNFLDARFFD VFVTAGGNRI TLYNCLGDGA ISALQSYADE DKEESFYTVS WACGVNGNPY
101: VAAGGVKGII RVIDVNSETI HKSLVGHGDS VNEIRTQPLK PQLVITASKD ESVRLWNVET GICILIFAGA GGHRYEVLSV DFHPSDIYRF ASCGMDTTIK
201: IWSMKEFWTY VEKSFTWTDD PSKFPTKFVQ FPVFTASIHT NYVDCNRWFG DFILSKSVDN EILLWEPQLK ENSPGEGASD VLLRYPVPMC DIWFIKFSCD
301: LHLSSVAIGN QEGKVYVWDL KSCPPVLITK LSHNQSKSVI RQTAMSVDGS TILACCEDGT IWRWDVITK

Arabidopsis Description

FIEPolycomb group protein FERTILIZATION-INDEPENDENT ENDOSPERM [Source:UniProtKB/Swiss-Prot;Acc:Q9LT47]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.