Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400061016 | Potato | cytosol | 89.36 | 89.15 |
| VIT_16s0013g01550.t01 | Wine grape | nucleus | 89.36 | 89.15 |
| Solyc01g104510.2.1 | Tomato | nucleus | 88.89 | 88.68 |
| AT5G58230.1 | Thale cress | nucleus | 88.65 | 88.44 |
| TraesCS5B01G378700.1 | Wheat | nucleus | 88.65 | 87.62 |
| TraesCS5D01G385600.1 | Wheat | nucleus | 88.65 | 87.62 |
| TraesCSU01G072700.1 | Wheat | nucleus | 88.42 | 87.38 |
| Os03t0640100-01 | Rice | cytosol | 88.42 | 87.38 |
| Zm00001d033252_P001 | Maize | cytosol, nucleus, plastid | 24.11 | 87.18 |
| KRH42369 | Soybean | nucleus | 87.0 | 86.59 |
| Zm00001d033248_P002 | Maize | cytoskeleton, cytosol, nucleus | 87.94 | 86.31 |
| KRH58491 | Soybean | nucleus | 86.52 | 86.12 |
| TraesCS5D01G385800.1 | Wheat | cytosol | 45.39 | 86.1 |
| Zm00001d033247_P001 | Maize | nucleus | 87.47 | 85.85 |
| Zm00001d013702_P001 | Maize | nucleus | 83.92 | 82.37 |
| GSMUA_Achr5P02390_001 | Banana | cytosol | 80.14 | 80.71 |
| CDY02805 | Canola | nucleus | 79.43 | 80.19 |
| CDY43875 | Canola | nucleus | 79.67 | 79.11 |
| Bra002667.1-P | Field mustard | nucleus | 78.72 | 78.17 |
| CDY62688 | Canola | nucleus | 78.72 | 78.17 |
| CDY32715 | Canola | nucleus | 75.18 | 76.44 |
| Bra020379.1-P | Field mustard | cytosol | 75.18 | 76.44 |
| OQU91278 | Sorghum | cytosol, nucleus, plastid | 88.42 | 61.51 |
| GSMUA_Achr8P33950_001 | Banana | nucleus | 55.32 | 57.92 |
| CDY58569 | Canola | cytosol | 86.52 | 57.55 |
| CDX88663 | Canola | nucleus | 86.52 | 57.55 |
| GSMUA_Achr1P26410_001 | Banana | nucleus | 53.9 | 56.02 |
| GSMUA_Achr4P08720_001 | Banana | cytosol | 28.13 | 29.24 |
| GSMUA_Achr7P09120_001 | Banana | nucleus | 29.55 | 27.47 |
| GSMUA_Achr3P32330_001 | Banana | cytosol | 10.64 | 25.0 |
| GSMUA_Achr6P14510_001 | Banana | cytosol, mitochondrion, peroxisome, plastid | 17.26 | 22.96 |
| GSMUA_Achr7P24160_001 | Banana | nucleus | 13.0 | 22.92 |
| GSMUA_Achr8P09420_001 | Banana | cytosol, nucleus, plastid | 25.3 | 22.86 |
| GSMUA_Achr10P... | Banana | mitochondrion | 15.84 | 20.94 |
Protein Annotations
| MapMan:12.2.1.3 | MapMan:12.3.3.1.1.1 | Gene3D:2.130.10.10 | InterPro:G-protein_beta_WD-40_rep | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | EnsemblPlantsGene:GSMUA_Achr4G31680_001 |
| EnsemblPlants:GSMUA_Achr4P31680_001 | EnsemblPlants:GSMUA_Achr4T31680_001 | InterPro:Histone-bd_RBBP4_N | InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 |
| UniProt:M0STT0 | PFAM:PF00400 | PFAM:PF12265 | PRINTS:PR00320 | ScanProsite:PS00678 | PFscan:PS50082 |
| PFscan:PS50294 | PANTHER:PTHR22850 | PANTHER:PTHR22850:SF82 | SMART:SM00320 | SUPFAM:SSF50978 | UniParc:UPI000296265B |
| InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | SEG:seg |
Description
WD-40 repeat-containing protein MSI1 [Source:GMGC_GENE;Acc:GSMUA_Achr4G31680_001]
Coordinates
chr4:+:28784709..28791971
Molecular Weight (calculated)
48209.2 Da
IEP (calculated)
4.427
GRAVY (calculated)
-0.571
Length
423 amino acids
Sequence
(BLAST)
(BLAST)
001: MAKDEEEFRG EMEERLVNEE YKIWKKNTPF LYDLVITHAL EWPSLTVQWL PDRDEPAGKD YSVQKMILGT HTSDNEPNYL MLAQVQLPLE DAEYDARQYD
101: DEHGEIGGFG CAGGKVQIVQ QINHDGEVNR ARYMPQNPFI IATKTVSAEV YVFDYSKHPS KPPLDGACNP DLKLRGHNSE GYGLSWSQFK QGHLLSGSDD
201: AQICLWDINS TPKNKALDAL QTFKVHDGVV EDVAWHLRHE YYFGSVGDDH YLLLWDLRNT NNKPVMSVVA HQGEVNCLAF NPFNEWVVAT GSTDKTVKLF
301: DLRKLENALH TLDCHKEEVF QVGWNPKNET ILASCCLGRR LMVWDLSRID EEQTPEDAED GPPELLFIHG GHTSKISDFS WNSCEDWVIA SVAEDNILQI
401: WQMAENIYHD EDDLPGDEPP KAS
101: DEHGEIGGFG CAGGKVQIVQ QINHDGEVNR ARYMPQNPFI IATKTVSAEV YVFDYSKHPS KPPLDGACNP DLKLRGHNSE GYGLSWSQFK QGHLLSGSDD
201: AQICLWDINS TPKNKALDAL QTFKVHDGVV EDVAWHLRHE YYFGSVGDDH YLLLWDLRNT NNKPVMSVVA HQGEVNCLAF NPFNEWVVAT GSTDKTVKLF
301: DLRKLENALH TLDCHKEEVF QVGWNPKNET ILASCCLGRR LMVWDLSRID EEQTPEDAED GPPELLFIHG GHTSKISDFS WNSCEDWVIA SVAEDNILQI
401: WQMAENIYHD EDDLPGDEPP KAS
001: MGKDEEEMRG EIEERLINEE YKIWKKNTPF LYDLVITHAL EWPSLTVEWL PDREEPSGKD YSVQKMILGT HTSESEPNYL MLAQVQLPLD DTESEARQYD
101: DDRSEFGGFG CATGKVQIIQ QINHDGEVNR ARYMPQNPFI IATKTVNAEV YVFDYSKHPS KPPLDGACNP DLKLRGHSSE GYGLSWSKFK QGHLLSGSDD
201: AQICLWDINA TPKNKSLDAQ QIFKAHEGVV EDVAWHLRHE YLFGSVGDDQ YLLIWDLRSP SASKPVQSVV AHSMEVNCLA FNPFNEWVVA TGSTDKTVKL
301: FDLRKLSTAL HTFDSHKEEV FQVGWNPKNE TILASCCLGR RLMVWDLSRI DEEQTVEDAE DGPPELLFIH GGHTSKISDF SWNPCEDWVI SSVAEDNILQ
401: IWQMAENIYH DEDDAPGEEP SKAS
101: DDRSEFGGFG CATGKVQIIQ QINHDGEVNR ARYMPQNPFI IATKTVNAEV YVFDYSKHPS KPPLDGACNP DLKLRGHSSE GYGLSWSKFK QGHLLSGSDD
201: AQICLWDINA TPKNKSLDAQ QIFKAHEGVV EDVAWHLRHE YLFGSVGDDQ YLLIWDLRSP SASKPVQSVV AHSMEVNCLA FNPFNEWVVA TGSTDKTVKL
301: FDLRKLSTAL HTFDSHKEEV FQVGWNPKNE TILASCCLGR RLMVWDLSRI DEEQTVEDAE DGPPELLFIH GGHTSKISDF SWNPCEDWVI SSVAEDNILQ
401: IWQMAENIYH DEDDAPGEEP SKAS
Arabidopsis Description
MSI1Histone-binding protein MSI1 [Source:UniProtKB/Swiss-Prot;Acc:O22467]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.