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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 1
  • mitochondrion 1
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, nucleus, plastid
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:plastid
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
EER92258
EER92590
EER93242
EER93243
EER93338
EER96052
EER97137
EES00105
EES01878
EES02512
EES04741
EES05938
EES09994
EES12512
EES13318
EES15827
EES19692
KXG20269
KXG25810
KXG33424
KXG37542
KXG40039
OQU76471
OQU77603
OQU79846
OQU84307
OQU89244
OQU90562
OQU90753

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G58230.1 KXG40039 AT1G02580.1 12970192
AT5G58230.1 EER92258 AT1G05190.1 23778966
AT5G58230.1 EER92590 AT2G32840.1 23778966
AT5G58230.1 OQU84307 AT2G40630.1 23778966
AT5G58230.1 EER93242 AT2G41840.1 23778966
AT5G58230.1 EER93243 AT2G41840.1 23778966
AT5G58230.1 EER96052 AT2G41840.1 23778966
AT5G58230.1 OQU76471 AT2G41840.1 23778966
AT5G58230.1 OQU90562 AT2G41840.1 23778966
AT5G58230.1 EES09994 AT3G03960.1 23778966
AT5G58230.1 EES05938 AT3G20050.1 23778966
AT5G58230.1 EES13318 AT3G20740.1 12970192
AT5G58230.1 OQU79846 AT3G20740.1 12970192
AT5G58230.1 EES13318 AT3G20740.1 18812497
AT5G58230.1 OQU79846 AT3G20740.1 18812497
AT5G58230.1 EES13318 AT3G20740.1 23778966
AT5G58230.1 OQU79846 AT3G20740.1 23778966
AT5G58230.1 EES02512 AT3G49910.1 23778966
AT5G58230.1 EES19692 AT3G56340.1 23778966
AT5G58230.1 OQU90753 AT3G56340.1 23778966
AT5G58230.1 KXG40039 AT4G02020.1 23778966
AT5G58230.1 KXG25810 AT4G16845.1 23778966
AT5G58230.1 KXG37542 AT4G16845.1 23778966
AT5G58230.1 OQU89244 AT4G16845.1 23778966
AT5G58230.1 EES00105 AT4G18960.1 23778966
AT5G58230.1 EES01878 AT4G18960.1 23778966
AT5G58230.1 EES15827 AT4G18960.1 23778966
AT5G58230.1 OQU77603 AT4G18960.1 23778966
AT5G58230.1 EER97137 AT4G27090.1 23778966
AT5G58230.1 EES12512 AT4G27090.1 23778966
AT5G58230.1 KXG33424 AT4G29000.1 23778966
AT5G58230.1 EES04741 AT4G38130.1 23778966
AT5G58230.1 KXG20269 AT4G38130.1 23778966
AT5G58230.1 EER93338 AT5G46210.1 21240189
AT5G58230.1 KXG25810 AT5G51230.1 23778966
AT5G58230.1 KXG37542 AT5G51230.1 23778966
AT5G58230.1 OQU89244 AT5G51230.1 23778966
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d033248_P002 Maize cytoskeleton, cytosol, nucleus 69.41 97.91
Zm00001d033247_P001 Maize nucleus 68.91 97.22
TraesCS5D01G385600.1 Wheat nucleus 67.43 95.79
TraesCS5B01G378700.1 Wheat nucleus 67.27 95.56
TraesCSU01G072700.1 Wheat nucleus 67.11 95.33
Os03t0640100-01 Rice cytosol 66.61 94.63
TraesCS5D01G385800.1 Wheat cytosol 33.72 91.93
GSMUA_Achr4P31680_001 Banana nucleus 61.51 88.42
VIT_16s0013g01550.t01 Wine grape nucleus 60.86 87.26
KRH42369 Soybean nucleus 60.53 86.59
AT5G58230.1 Thale cress nucleus 60.2 86.32
KRH58491 Soybean nucleus 60.2 86.12
PGSC0003DMT400061016 Potato cytosol 60.03 86.08
Solyc01g104510.2.1 Tomato nucleus 59.7 85.61
CDY02805 Canola nucleus 54.28 78.76
CDY43875 Canola nucleus 55.1 78.64
Bra002667.1-P Field mustard nucleus 54.11 77.23
CDY62688 Canola nucleus 54.11 77.23
GSMUA_Achr5P02390_001 Banana cytosol 52.47 75.95
CDY32715 Canola nucleus 51.32 75.0
Bra020379.1-P Field mustard cytosol 51.32 75.0
CDY58569 Canola cytosol 58.88 56.29
CDX88663 Canola nucleus 58.88 56.29
EER97107 Sorghum cytosol 35.2 53.1
EES01357 Sorghum nucleus 22.7 30.46
EES04830 Sorghum cytosol, peroxisome, plastid 12.5 23.68
EES15567 Sorghum cytosol, mitochondrion, nucleus, plastid 17.6 22.34
OQU82815 Sorghum mitochondrion 16.78 22.22
Protein Annotations
MapMan:12.2.1.3MapMan:12.3.3.1.1.1Gene3D:2.130.10.10EntrezGene:8062219UniProt:A0A1Z5S5T6InterPro:G-protein_beta_WD-40_rep
GO:GO:0000003GO:GO:0003674GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005634GO:GO:0005654GO:GO:0005677GO:GO:0005737GO:GO:0006139
GO:GO:0006349GO:GO:0007049GO:GO:0007275GO:GO:0008150GO:GO:0008152GO:GO:0008283
GO:GO:0009507GO:GO:0009536GO:GO:0009555GO:GO:0009790GO:GO:0009791GO:GO:0009793
GO:GO:0009908GO:GO:0009909GO:GO:0009987GO:GO:0010026GO:GO:0010214GO:GO:0016020
GO:GO:0016021GO:GO:0016043GO:GO:0030154GO:GO:0031507GO:GO:0040029GO:GO:0043234
GO:GO:0045787GO:GO:0048316GO:GO:0048366GO:GO:0070828GO:GO:2000653InterPro:Histone-bd_RBBP4_N
InterPro:IPR001680InterPro:IPR015943InterPro:IPR017986EnsemblPlants:OQU91278ProteinID:OQU91278ProteinID:OQU91278.1
PFAM:PF00400PFAM:PF12265PRINTS:PR00320ScanProsite:PS00678PFscan:PS50082PFscan:PS50294
PANTHER:PTHR22850PANTHER:PTHR22850:SF82SMART:SM00320EnsemblPlantsGene:SORBI_3001G157600SUPFAM:SSF50978unigene:Sbi.3811
TMHMM:TMhelixUniParc:UPI000B8BA1FBInterPro:WD40/YVTN_repeat-like_dom_sfInterPro:WD40_repeatInterPro:WD40_repeat_CSInterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sfSEG:seg::::
Description
hypothetical protein
Coordinates
chr1:+:12769328..12777572
Molecular Weight (calculated)
68398.0 Da
IEP (calculated)
4.650
GRAVY (calculated)
-0.507
Length
608 amino acids
Sequence
(BLAST)
001: MPKAGGGAAD EEEFRAEVEE RLINEEYKIW KKNTPFLYDL VITHALEWPS LTVQWLPDRT EPPGKDHSVQ KMILGTHTSD NEPNYLMLAQ VQLPLDDAEA
101: DARHYDDEHT DIGGFGAASG KASAKNACYS TQLGNLFLAT MMLAILVLFA QSLSHLPKPP PLPNPNPSPR PGRPTMSKAG GAADGEEFRV EVENRLINEE
201: YKIWKNTTLF LYDLVVTHAL EWPSLTVQWL PNRTEPPGKD HSVQNMILST YTCDNEPNYL MLAQVQLPLD DDDDAEADAR HYDDDHTDIR GLGSASSKVQ
301: IVQQINHDGE VNRARYMPQN SFIIATKTVS AEVYVFDYSK HPSKPPLDGA CNPDLRLKGH NSEGYGLSWS IFKEGHLLSG SDDAQICLWD IKANSKNKSL
401: DALQIFKHHD GVVEDVAWHL RHEYLFGSVG DDHHLLIWDL RSPAPTKPVQ SVVAHQGEVN CLAFNPFNEW VVATGSTDKT VKLFDLRKID TSLHTFHNHK
501: EEVFQVGWSP KNETILASCC LGRRLMIWDL SRIDQEQTPE DAEDGPPELM FIHGGHTSKI SDFSWNPCED WVIASVAEDN ILQIWQMAEN IYHDEDDLPI
601: SDEPAKTS
Best Arabidopsis Sequence Match ( AT5G58230.1 )
(BLAST)
001: MGKDEEEMRG EIEERLINEE YKIWKKNTPF LYDLVITHAL EWPSLTVEWL PDREEPSGKD YSVQKMILGT HTSESEPNYL MLAQVQLPLD DTESEARQYD
101: DDRSEFGGFG CATGKVQIIQ QINHDGEVNR ARYMPQNPFI IATKTVNAEV YVFDYSKHPS KPPLDGACNP DLKLRGHSSE GYGLSWSKFK QGHLLSGSDD
201: AQICLWDINA TPKNKSLDAQ QIFKAHEGVV EDVAWHLRHE YLFGSVGDDQ YLLIWDLRSP SASKPVQSVV AHSMEVNCLA FNPFNEWVVA TGSTDKTVKL
301: FDLRKLSTAL HTFDSHKEEV FQVGWNPKNE TILASCCLGR RLMVWDLSRI DEEQTVEDAE DGPPELLFIH GGHTSKISDF SWNPCEDWVI SSVAEDNILQ
401: IWQMAENIYH DEDDAPGEEP SKAS
Arabidopsis Description
MSI1Histone-binding protein MSI1 [Source:UniProtKB/Swiss-Prot;Acc:O22467]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.