CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER87680
EER88427
EER89430
EER89431
EER92305
EER92716
EER97734
EES00066
EES03295
EES05647
EES14382
EES17172
EES19051
KXG19616
KXG22639
KXG29961
KXG32474
KXG38192
OQU75612
OQU75930
OQU76071
OQU78181
OQU78405
OQU79284
OQU85385
OQU85551

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G32840.1	EES19051	AT2G47700.1	21798944
AT2G32840.1	KXG32474	AT2G47700.1	21798944
AT2G32840.1	EES17172	AT2G47710.1	21798944
AT2G32840.1	OQU79284	AT2G47710.1	21798944
AT2G32840.1	EES05647	AT3G27960.1	21798944
AT2G32840.1	OQU78405	AT3G50910.1	21798944
AT2G32840.1	OQU85551	AT3G50910.1	21798944
AT2G32840.1	EER87680	AT3G54850.1	21798944
AT2G32840.1	EER92305	AT3G56270.1	21798944
AT2G32840.1	EER97734	AT3G56270.1	21798944
AT2G32840.1	OQU78181	AT3G56270.1	21798944
AT2G32840.1	EES14382	AT4G00120.1	21798944
AT2G32840.1	EER88427	AT4G01090.1	21798944
AT2G32840.1	EES03295	AT4G01090.1	21798944
AT2G32840.1	KXG22639	AT4G01090.1	21798944
AT2G32840.1	KXG29961	AT4G01090.1	21798944
AT2G32840.1	EER89430	AT4G25200.1	21798944
AT2G32840.1	EER89431	AT4G25200.1	21798944
AT2G32840.1	KXG19616	AT4G25200.1	21798944
AT2G32840.1	OQU75612	AT4G25200.1	21798944
AT2G32840.1	OQU75930	AT4G25200.1	21798944
AT2G32840.1	OQU76071	AT4G25200.1	21798944
AT2G32840.1	OQU85385	AT4G25200.1	21798944
AT2G32840.1	EES00066	AT4G30330.1	21798944
AT2G32840.1	KXG38192	AT4G39050.1	21798944
AT2G32840.1	EER92716	AT5G11980.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d047985_P002	Maize	plastid	89.0	75.34
Os03t0234600-00	Rice	plastid	52.43	61.13
TraesCS4B01G232900.1	Wheat	plastid	59.55	48.55
TraesCS4D01G234100.1	Wheat	plastid	58.9	48.28
TraesCS4A01G076800.1	Wheat	plastid	57.93	47.61
HORVU4Hr1G064990.1	Barley	plastid	57.28	45.27
GSMUA_Achr7P11350_001	Banana	endoplasmic reticulum, extracellular	24.27	43.35
GSMUA_Achr6P06320_001	Banana	nucleus	12.95	37.38
VIT_13s0156g00270.t01	Wine grape	cytosol	12.62	30.71
KRH43426	Soybean	cytosol	24.27	27.68
KRH13875	Soybean	cytosol, nucleus, plastid	24.92	26.74
CDY12159	Canola	nucleus, plastid	24.6	25.59
Bra005553.1-P	Field mustard	nucleus, plastid	24.27	25.08
CDY52552	Canola	nucleus, plastid	22.33	23.47
Solyc01g073920.2.1	Tomato	cytosol, plastid	24.6	22.22
CDX89775	Canola	plastid	23.3	21.3
Bra015366.1-P	Field mustard	nucleus, plastid	22.98	21.01
CDY18271	Canola	plastid	19.42	20.2
AT1G04930.2	Thale cress	nucleus, plastid	22.01	18.78
AT2G32840.1	Thale cress	nucleus, plastid	20.39	18.69
PGSC0003DMT400016192	Potato	nucleus, plastid	13.92	15.04

Protein Annotations

EnsemblPlants:EER92590	EnsemblPlantsGene:SORBI_3001G444600	EntrezGene:8056836	GO:GO:0005575	GO:GO:0007049	GO:GO:0008150
GO:GO:0009987	GO:GO:0017053	InterPro:LIN37	PANTHER:PTHR37173	PFAM:PF15306	ProteinID:EER92590
ProteinID:EER92590.1	RefSeq:XP_002465592.1	SEG:seg	UniParc:UPI0001A82793	UniProt:C5WRN6	MapMan:35.2

Description

hypothetical protein

Coordinates

chr1:+:72156444..72160703

Molecular Weight (calculated)

32918.9 Da

IEP (calculated)

10.718

GRAVY (calculated)

-0.592

Length

309 amino acids

Sequence
(BLAST)

001: MASPPQGQPA TAAEPAAAAA TSSQLPAASR QLPRAFLATS PPPATAAAPA PPLFTGRPLN PNPPGHGSSV PHGILYPALR SASTSNSAAA AVNAQLRRVP
101: PMAVGYPRTH AVAVPIAQQQ PLVRELPRSF AAVPRALVAG VAARPEQPPR GVPIASQPKA NPIPPVGPSN EQSNPKDREK SREEPTVVVI NDRKVNLLDS
201: ESGSLYALCR SWVRNGVPHE SQPSFGNGEP LLPRPLPASV VDSRISERDN NDAAGEDSDE EPQKNENGEY NTSDLLKQHV KRAKRIRAGL QKDRSRRIER
301: YKQRLALLL

Best Arabidopsis Sequence Match ( AT2G32840.1 )
(BLAST)

001: MSTPDPNPNP NPNPSVSVAV STPIVTASES PVTQPNTVIT PSSQPQPQTP ASSYRAIAPL HRHHPHQNIY TNPLPIRRSN SVTNSPHQPP HPDPSSLIYP
101: FGSSGRGFPT RPVRQNSNSV ADPVGSPSPG GYTPRGPVYG YHHGQFVSNL DPMNQFMRAA HPQNQQSPQL GSGHMKGVPH FLQPRATPSP TSILDNSGHK
201: KARSRDDALV LVRKRKVRIT EGASLYSLCR SWLRNGAHEG IKPQRIDMMT CLPKPLPVDK TETSLPKDLV EEAICEEDKE DEESVKHLSE SDLLKRHIDR
301: AKKVRARLRE ERLKRIARYK ARLALLLPPF GEQCRNE

Arabidopsis Description

Proline-rich family protein [Source:UniProtKB/TrEMBL;Acc:Q8GYK6]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.