Factsheet for Bra015366.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
plastid 5
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
EpiLoc:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX89775	Canola	plastid	88.46	88.46
Bra005553.1-P	Field mustard	nucleus, plastid	43.79	49.5
AT1G04930.2	Thale cress	nucleus, plastid	50.0	46.69
VIT_13s0156g00270.t01	Wine grape	cytosol	15.38	40.94
GSMUA_Achr7P11350_001	Banana	endoplasmic reticulum, extracellular	19.82	38.73
GSMUA_Achr6P06320_001	Banana	nucleus	10.95	34.58
KRH43426	Soybean	cytosol	26.92	33.58
KRH13875	Soybean	cytosol, nucleus, plastid	26.92	31.6
Solyc01g073920.2.1	Tomato	cytosol, plastid	30.47	30.12
EER92590	Sorghum	plastid	21.01	22.98
TraesCS4D01G234100.1	Wheat	plastid	24.26	21.75
TraesCS4A01G076800.1	Wheat	plastid	23.96	21.54
HORVU4Hr1G064990.1	Barley	plastid	24.85	21.48
TraesCS4B01G232900.1	Wheat	plastid	23.96	21.37
PGSC0003DMT400016192	Potato	nucleus, plastid	15.98	18.88
Zm00001d047985_P002	Maize	plastid	19.82	18.36
Os03t0234600-00	Rice	plastid	13.61	17.36

Protein Annotations

EnsemblPlants:Bra015366.1	EnsemblPlants:Bra015366.1-P	EnsemblPlantsGene:Bra015366	GO:GO:0005575	GO:GO:0007049	GO:GO:0008150
GO:GO:0009987	GO:GO:0017053	InterPro:LIN37	ncoils:Coil	PANTHER:PTHR37173	PFAM:PF15306
SEG:seg	UniParc:UPI0002543CAF	UniProt:M4DFU3	MapMan:35.2	:	:

Description

AT1G04930 (E=9e-063) | hydroxyproline-rich glycoprotein family protein

Coordinates

chrA10:+:2252143..2254420

Molecular Weight (calculated)

36983.1 Da

IEP (calculated)

11.010

GRAVY (calculated)

-0.828

Length

338 amino acids

Sequence
(BLAST)

001: MSTPDPNSSA SATATPPLVT ASETPAPPAN NLRPTPSQPP HAPPPPSLPY RAIAPVQHAN PLQQTHNNLP NRRPNSPRQL HHHHQDPSTV LYPFAPHPPP
101: GRGGFSVRPV RMSSPLVAGA VPPSVTVAGG NQSGYPGLPY NHRLAESMMQ LMRARNPQIQ HQVPRPGSGS PVGSGPMRGV PHFLQPRVAP PPTSILDTGR
201: NKNARRRDAL VLVRGRKVRI TDEASLYSLS RSWLRNGAHE GMQSQRSDTM KALPKPLPLD VMEAAVPNDP AEKPTDEDKE DEESVKDLTE KDLLKGHIDR
301: AKKVRARLRE ERSRKIARYK GRLALLLPQS GEQCMKND

Best Arabidopsis Sequence Match ( AT1G04930.1 )
(BLAST)

001: MSIPDPNSSA SLTVSPSLST ASETPVTPVN TVRPPPSQPP PAPPPLPPPT YRPIAPLRHP NPFQQQSAYS NNLYAHSIPV RRQIQDPSAV LYPFALPGRG
101: FSARPVRGFV ADPSVTAGNL SGYPPRPSFT YDPGPYEQRQ MESLLQQFIR ERNPQIRPLP RLGLGSPVGL GPIRASPQFL QPRVAPPPTS ILDTSRNRKA
201: RSKDGALAVV RGRKVRITEG SSSLYSLGRS WLKNGAHVGI QPQRSGIMKP LPKPLPVDLT TETSVPDDPD EESADEDKED EEAVKQLSEK DLLKRHIERA
301: KKVRAQLREE RSRRIRRYKE RITLILAQSE DR

Arabidopsis Description

Hydroxyproline-rich glycoprotein family protein [Source:UniProtKB/TrEMBL;Acc:F4I764]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.