CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 5
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra015366.1-P	Field mustard	nucleus, plastid	88.46	88.46
CDY18271	Canola	plastid	74.26	84.51
AT1G04930.2	Thale cress	nucleus, plastid	53.25	49.72
CDY12159	Canola	nucleus, plastid	42.6	48.48
CDY52552	Canola	nucleus, plastid	39.35	45.24
VIT_13s0156g00270.t01	Wine grape	cytosol	15.38	40.94
GSMUA_Achr7P11350_001	Banana	endoplasmic reticulum, extracellular	19.23	37.57
GSMUA_Achr6P06320_001	Banana	nucleus	10.95	34.58
KRH43426	Soybean	cytosol	26.63	33.21
Solyc01g073920.2.1	Tomato	cytosol, plastid	31.07	30.7
KRH13875	Soybean	cytosol, nucleus, plastid	26.04	30.56
EER92590	Sorghum	plastid	21.3	23.3
TraesCS4D01G234100.1	Wheat	plastid	24.26	21.75
TraesCS4B01G232900.1	Wheat	plastid	24.26	21.64
HORVU4Hr1G064990.1	Barley	plastid	24.85	21.48
TraesCS4A01G076800.1	Wheat	plastid	23.67	21.28
PGSC0003DMT400016192	Potato	nucleus, plastid	15.98	18.88
Zm00001d047985_P002	Maize	plastid	19.82	18.36
Os03t0234600-00	Rice	plastid	13.31	16.98

Protein Annotations

EnsemblPlants:CDX89775	EnsemblPlantsGene:GSBRNA2T00150215001	GO:A0A078DKS2	GO:GO:0005575	GO:GO:0007049	GO:GO:0008150
GO:GO:0009987	GO:GO:0017053	InterPro:LIN37	ncoils:Coil	PANTHER:PTHR37173	PFAM:PF15306
ProteinID:CDX89775	ProteinID:CDX89775.1	SEG:seg	UniParc:UPI0004EEEB49	MapMan:35.2	:

Description

BnaA10g03070D

Coordinates

chrLK031861:+:16815..19092

Molecular Weight (calculated)

37006.2 Da

IEP (calculated)

11.010

GRAVY (calculated)

-0.820

Length

338 amino acids

Sequence
(BLAST)

001: MSTPDPNSSA SVTATPSLVT ASETPAPPAN NLRPTPSQPP HAPPPPSLPY RAIAPVQHAN PLQQTHNNLP NRRPNSPRQL HHHHQDPSTV LYPFAPHPPP
101: GRGGFSVRPV RMSSPLVAGA VPPSVTVAGG NQSGYPGLPY NHRLAESMMQ LMRARNPQIQ HQVPRPGSGS PVGSGPMRGV PQFLQPRVAP PPTSILDTGR
201: NKNARRRDAL VLVRGRKVRI TDEASLYSLS RSWLRNGAHE GMQSQRSDTM KALPKPLPLD VMEAAVPNDP AEKPTDEDKE DEESVKDLTE KDLLKGHIER
301: AKKVRARLRE ERSRKIARYK GRLALLLPQS GEQCMKND

Best Arabidopsis Sequence Match ( AT1G04930.1 )
(BLAST)

001: MSIPDPNSSA SLTVSPSLST ASETPVTPVN TVRPPPSQPP PAPPPLPPPT YRPIAPLRHP NPFQQQSAYS NNLYAHSIPV RRQIQDPSAV LYPFALPGRG
101: FSARPVRGFV ADPSVTAGNL SGYPPRPSFT YDPGPYEQRQ MESLLQQFIR ERNPQIRPLP RLGLGSPVGL GPIRASPQFL QPRVAPPPTS ILDTSRNRKA
201: RSKDGALAVV RGRKVRITEG SSSLYSLGRS WLKNGAHVGI QPQRSGIMKP LPKPLPVDLT TETSVPDDPD EESADEDKED EEAVKQLSEK DLLKRHIERA
301: KKVRAQLREE RSRRIRRYKE RITLILAQSE DR

Arabidopsis Description

Hydroxyproline-rich glycoprotein family protein [Source:UniProtKB/TrEMBL;Acc:F4I764]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.