CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 5
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX89775	Canola	plastid	84.51	74.26
CDY12159	Canola	nucleus, plastid	45.45	45.45
AT1G04930.2	Thale cress	nucleus, plastid	54.88	45.03
CDY52552	Canola	nucleus, plastid	42.09	42.52
VIT_13s0156g00270.t01	Wine grape	cytosol	17.17	40.16
GSMUA_Achr7P11350_001	Banana	endoplasmic reticulum, extracellular	21.55	36.99
GSMUA_Achr6P06320_001	Banana	nucleus	12.46	34.58
KRH43426	Soybean	cytosol	28.96	31.73
Solyc01g073920.2.1	Tomato	cytosol, plastid	33.33	28.95
KRH13875	Soybean	cytosol, nucleus, plastid	27.95	28.82
TraesCS4D01G234100.1	Wheat	plastid	24.92	19.63
EER92590	Sorghum	plastid	20.2	19.42
TraesCS4A01G076800.1	Wheat	plastid	24.58	19.41
HORVU4Hr1G064990.1	Barley	plastid	25.25	19.18
TraesCS4B01G232900.1	Wheat	plastid	24.24	19.0
PGSC0003DMT400016192	Potato	nucleus, plastid	17.51	18.18
Zm00001d047985_P002	Maize	plastid	18.86	15.34
Os03t0234600-00	Rice	plastid	13.13	14.72

Protein Annotations

EnsemblPlants:CDY18271	EnsemblPlantsGene:GSBRNA2T00002806001	GO:A0A078FYZ9	GO:GO:0005575	GO:GO:0007049	GO:GO:0008150
GO:GO:0009987	GO:GO:0017053	InterPro:LIN37	ncoils:Coil	PANTHER:PTHR37173	PFAM:PF15306
ProteinID:CDY18271	ProteinID:CDY18271.1	SEG:seg	UniParc:UPI0004EC657F	UniProt:A0A078FYZ9	MapMan:35.2

Description

BnaC05g02940DBnaC05g02940D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FYZ9]

Coordinates

chrLK032083:-:614510..616829

Molecular Weight (calculated)

32737.0 Da

IEP (calculated)

10.926

GRAVY (calculated)

-0.814

Length

297 amino acids

Sequence
(BLAST)

001: MSTPDPNSSA SATATPSLVV TASETPAPPA NNLRPTPSQP PNAPPPPSLP YRAIAANPLQ QTHNNRPNSS TVLYPFAPHP GRGGFSVRPV RMSAPLVGSV
101: TAAGNQSGYP GLPYNHRLAE SMMQFMRARN PQVQHQVSRP MRGVPHFLQP RVAPPPTSIL DTGRNKNARR RDALVLVRGR KVRITDEASL YSLSRSWLRN
201: GAHEGMQSQR SDTMKPLPKP LPLDVMEAAE KPTDDDDKED EESVKDLTEK DLLKGHIERA KKVRARLREE RSRKIARYKG RLALLLPQSG EQCTKND

Best Arabidopsis Sequence Match ( AT1G04930.1 )
(BLAST)

001: MSIPDPNSSA SLTVSPSLST ASETPVTPVN TVRPPPSQPP PAPPPLPPPT YRPIAPLRHP NPFQQQSAYS NNLYAHSIPV RRQIQDPSAV LYPFALPGRG
101: FSARPVRGFV ADPSVTAGNL SGYPPRPSFT YDPGPYEQRQ MESLLQQFIR ERNPQIRPLP RLGLGSPVGL GPIRASPQFL QPRVAPPPTS ILDTSRNRKA
201: RSKDGALAVV RGRKVRITEG SSSLYSLGRS WLKNGAHVGI QPQRSGIMKP LPKPLPVDLT TETSVPDDPD EESADEDKED EEAVKQLSEK DLLKRHIERA
301: KKVRAQLREE RSRRIRRYKE RITLILAQSE DR

Arabidopsis Description

Hydroxyproline-rich glycoprotein family protein [Source:UniProtKB/TrEMBL;Acc:F4I764]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.