Factsheet for Solyc01g073920.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 3
plastid 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g087650.2.1
Solyc01g110190.2.1
Solyc02g085000.2.1
Solyc02g086840.2.1
Solyc03g096760.1.1
Solyc03g096770.1.1
Solyc03g096780.1.1
Solyc03g098470.2.1
Solyc06g009050.2.1
Solyc06g050350.2.1
Solyc06g072280.2.1
Solyc06g072990.1.1
Solyc06g084540.2.1
Solyc08g078700.2.1
Solyc10g054080.1.1
Solyc11g005780.1.1
Solyc11g008390.1.1
Solyc11g044880.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G32840.1	Solyc06g009050.2.1	AT2G47710.1	21798944
AT2G32840.1	Solyc06g084540.2.1	AT2G47710.1	21798944
AT2G32840.1	Solyc02g086840.2.1	AT3G27960.1	21798944
AT2G32840.1	Solyc03g096760.1.1	AT3G49580.1	21798944
AT2G32840.1	Solyc03g096770.1.1	AT3G49580.1	21798944
AT2G32840.1	Solyc03g096780.1.1	AT3G49580.1	21798944
AT2G32840.1	Solyc06g072990.1.1	AT3G49580.1	21798944
AT2G32840.1	Solyc02g085000.2.1	AT3G50910.1	21798944
AT2G32840.1	Solyc11g008390.1.1	AT3G54850.1	21798944
AT2G32840.1	Solyc06g050350.2.1	AT3G56270.1	21798944
AT2G32840.1	Solyc11g005780.1.1	AT4G00120.1	21798944
AT2G32840.1	Solyc08g078700.2.1	AT4G25200.1	21798944
AT2G32840.1	Solyc03g098470.2.1	AT4G30330.1	21798944
AT2G32840.1	Solyc06g072280.2.1	AT4G30330.1	21798944
AT2G32840.1	Solyc01g110190.2.1	AT4G39050.1	21798944
AT2G32840.1	Solyc10g054080.1.1	AT4G39050.1	21798944
AT2G32840.1	Solyc11g044880.1.1	AT4G39050.1	21798944
AT2G32840.1	Solyc01g087650.2.1	AT5G11980.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400016192	Potato	nucleus, plastid	46.49	55.59
VIT_13s0156g00270.t01	Wine grape	cytosol	17.84	48.03
GSMUA_Achr7P11350_001	Banana	endoplasmic reticulum, extracellular	19.3	38.15
GSMUA_Achr6P06320_001	Banana	nucleus	10.82	34.58
KRH43426	Soybean	cytosol	26.9	33.95
CDY18271	Canola	plastid	28.95	33.33
Bra005553.1-P	Field mustard	nucleus, plastid	28.66	32.78
CDY12159	Canola	nucleus, plastid	28.36	32.66
CDY52552	Canola	nucleus, plastid	28.07	32.65
KRH13875	Soybean	cytosol, nucleus, plastid	26.9	31.94
CDX89775	Canola	plastid	30.7	31.07
Bra015366.1-P	Field mustard	nucleus, plastid	30.12	30.47
AT2G32840.1	Thale cress	nucleus, plastid	29.53	29.97
EER92590	Sorghum	plastid	22.22	24.6
AT1G04930.2	Thale cress	nucleus, plastid	26.02	24.59
TraesCS4A01G076800.1	Wheat	plastid	24.56	22.34
HORVU4Hr1G064990.1	Barley	plastid	25.44	22.25
TraesCS4B01G232900.1	Wheat	plastid	24.56	22.16
TraesCS4D01G234100.1	Wheat	plastid	24.27	22.02
Os03t0234600-00	Rice	plastid	16.96	21.89
Zm00001d047985_P002	Maize	plastid	22.81	21.37

Protein Annotations

EnsemblPlants:Solyc01g073920.2.1	EnsemblPlantsGene:Solyc01g073920.2	GO:GO:0005575	GO:GO:0007049	GO:GO:0008150	GO:GO:0009987
GO:GO:0017053	InterPro:LIN37	ncoils:Coil	PANTHER:PTHR31336	PFAM:PF15306	SEG:seg
UniParc:UPI0002761942	UniProt:K4AXD7	MapMan:35.2	:	:	:

Description

No Description!

Coordinates

chr1:-:81255801..81265804

Molecular Weight (calculated)

37164.9 Da

IEP (calculated)

10.480

GRAVY (calculated)

-0.674

Length

342 amino acids

Sequence
(BLAST)

001: MALSTPPAPP DPPPTAATNT ATADAAITTG IPTRPIFSNP VRPPTPQPHP PFSLQSSHFP STQRLPPSSN PGYSQLVLKP PNPDSQPHLH SILYPVASSG
101: RGFLSKPSNY PNRPVVSHLG SRPVFGVNQM DPGSGQSAGV RPSHLQHALL GSSPTVNSAG PAASSGVLPG AVKGFPVVSS SHNKIASTQP SLSDCNGFRD
201: KRDRSKDETF AIIRDRKVRI CDNASLYTLC RSWLRNGLPD DTQSQYMDGV RSLPRPLALA PQDAESPVKK EGDKEEEEEA GESVEHLSPK ELLQRHVKRA
301: KRIRSRLREE RLRRIARYKT RLALLLPPMV EQQFRNDPAS GN

Best Arabidopsis Sequence Match ( AT2G32840.1 )
(BLAST)

001: MSTPDPNPNP NPNPSVSVAV STPIVTASES PVTQPNTVIT PSSQPQPQTP ASSYRAIAPL HRHHPHQNIY TNPLPIRRSN SVTNSPHQPP HPDPSSLIYP
101: FGSSGRGFPT RPVRQNSNSV ADPVGSPSPG GYTPRGPVYG YHHGQFVSNL DPMNQFMRAA HPQNQQSPQL GSGHMKGVPH FLQPRATPSP TSILDNSGHK
201: KARSRDDALV LVRKRKVRIT EGASLYSLCR SWLRNGAHEG IKPQRIDMMT CLPKPLPVDK TETSLPKDLV EEAICEEDKE DEESVKHLSE SDLLKRHIDR
301: AKKVRARLRE ERLKRIARYK ARLALLLPPF GEQCRNE

Arabidopsis Description

Proline-rich family protein [Source:UniProtKB/TrEMBL;Acc:Q8GYK6]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.