Factsheet for Bra005553.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
plastid 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000458.1-P
Bra000943.1-P
Bra000979.1-P
Bra004435.1-P
Bra004436.1-P
Bra006136.1-P
Bra007105.1-P
Bra007233.1-P
Bra010544.1-P
Bra010714.1-P
Bra012880.1-P
Bra013872.1-P
Bra017974.1-P
Bra021440.1-P
Bra023354.1-P
Bra025315.1-P
Bra033597.1-P
Bra036850.1-P
Bra037384.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G32840.1	Bra004436.1-P	AT2G47700.1	21798944
AT2G32840.1	Bra000458.1-P	AT2G47710.1	21798944
AT2G32840.1	Bra004435.1-P	AT2G47710.1	21798944
AT2G32840.1	Bra021440.1-P	AT2G47710.1	21798944
AT2G32840.1	Bra025315.1-P	AT3G27960.1	21798944
AT2G32840.1	Bra017974.1-P	AT3G49580.1	21798944
AT2G32840.1	Bra012880.1-P	AT3G50910.1	21798944
AT2G32840.1	Bra036850.1-P	AT3G50910.1	21798944
AT2G32840.1	Bra007105.1-P	AT3G54850.1	21798944
AT2G32840.1	Bra007233.1-P	AT3G56270.1	21798944
AT2G32840.1	Bra000979.1-P	AT4G00120.1	21798944
AT2G32840.1	Bra000943.1-P	AT4G01090.1	21798944
AT2G32840.1	Bra037384.1-P	AT4G01090.1	21798944
AT2G32840.1	Bra010544.1-P	AT4G23770.1	21798944
AT2G32840.1	Bra013872.1-P	AT4G25200.1	21798944
AT2G32840.1	Bra010714.1-P	AT4G39050.1	21798944
AT2G32840.1	Bra033597.1-P	AT4G39050.1	21798944
AT2G32840.1	Bra006136.1-P	AT5G11980.1	21798944
AT2G32840.1	Bra023354.1-P	AT5G11980.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY12159	Canola	nucleus, plastid	89.97	90.57
AT2G32840.1	Thale cress	nucleus, plastid	56.52	50.15
Bra015366.1-P	Field mustard	nucleus, plastid	49.5	43.79
VIT_13s0156g00270.t01	Wine grape	cytosol	18.39	43.31
GSMUA_Achr7P11350_001	Banana	endoplasmic reticulum, extracellular	22.74	39.31
KRH43426	Soybean	cytosol	30.1	33.21
GSMUA_Achr6P06320_001	Banana	nucleus	11.71	32.71
KRH13875	Soybean	cytosol, nucleus, plastid	30.43	31.6
Solyc01g073920.2.1	Tomato	cytosol, plastid	32.78	28.66
EER92590	Sorghum	plastid	25.08	24.27
TraesCS4A01G076800.1	Wheat	plastid	28.43	22.61
TraesCS4D01G234100.1	Wheat	plastid	28.09	22.28
TraesCS4B01G232900.1	Wheat	plastid	27.09	21.37
Os03t0234600-00	Rice	plastid	18.39	20.75
HORVU4Hr1G064990.1	Barley	plastid	26.42	20.2
Zm00001d047985_P002	Maize	plastid	24.08	19.73
PGSC0003DMT400016192	Potato	nucleus, plastid	17.06	17.83

Protein Annotations

EnsemblPlants:Bra005553.1	EnsemblPlants:Bra005553.1-P	EnsemblPlantsGene:Bra005553	GO:GO:0005575	GO:GO:0007049	GO:GO:0008150
GO:GO:0009987	GO:GO:0017053	InterPro:LIN37	ncoils:Coil	PANTHER:PTHR37173	PFAM:PF15306
SEG:seg	UniParc:UPI00025475C1	UniProt:M4CMW5	MapMan:35.2	:	:

Description

AT2G32840 (E=2e-089) | proline-rich family protein

Coordinates

chrA05:+:6181035..6182746

Molecular Weight (calculated)

32970.3 Da

IEP (calculated)

10.335

GRAVY (calculated)

-0.697

Length

299 amino acids

Sequence
(BLAST)

001: MSTPDPNASV SLAAASETPM TQPSTVKPPS PQPPYRAIAP LHRQPQQSIH PHPFPVRRSN PVSGSPLQDP SALAYPGRGL PTRPGRQSPS TVADLSGGYP
101: TLPVYAYQNG QSLDPMSQFM RAQYPQIQPA SHLGSGHLKG VPHFLQPRVA HPPLTSILDN GGRKNSRSRN DVLVLIRKRK VRITEGASLY SLCRSWLRNG
201: AHEGLQKQQS DTTVTCLPKP LPASDVVETS LPKDSVEEPN CVEEDKEDEE SVKQLSDADL LKRHVDRAKK VRARLREERL KRIARYKARL ALLLPPFGE

Best Arabidopsis Sequence Match ( AT2G32840.1 )
(BLAST)

001: MSTPDPNPNP NPNPSVSVAV STPIVTASES PVTQPNTVIT PSSQPQPQTP ASSYRAIAPL HRHHPHQNIY TNPLPIRRSN SVTNSPHQPP HPDPSSLIYP
101: FGSSGRGFPT RPVRQNSNSV ADPVGSPSPG GYTPRGPVYG YHHGQFVSNL DPMNQFMRAA HPQNQQSPQL GSGHMKGVPH FLQPRATPSP TSILDNSGHK
201: KARSRDDALV LVRKRKVRIT EGASLYSLCR SWLRNGAHEG IKPQRIDMMT CLPKPLPVDK TETSLPKDLV EEAICEEDKE DEESVKHLSE SDLLKRHIDR
301: AKKVRARLRE ERLKRIARYK ARLALLLPPF GEQCRNE

Arabidopsis Description

Proline-rich family protein [Source:UniProtKB/TrEMBL;Acc:Q8GYK6]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.