Factsheet for Bra012880.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 4
cytosol 1
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
Predotar:	plastid
PProwler:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000304.1-P
Bra001003.1-P
Bra003403.1-P
Bra003423.1-P
Bra003624.1-P
Bra005866.1-P
Bra007514.1-P
Bra007528.1-P
Bra007547.1-P
Bra008392.1-P
Bra013962.1-P
Bra014481.1-P
Bra014494.1-P
Bra014506.1-P
Bra018531.1-P
Bra024408.1-P
Bra031109.1-P
Bra031849.1-P
Bra035087.1-P
Bra036122.1-P
Bra036243.1-P
Bra036793.1-P
Bra038904.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G50910.1	Bra036122.1-P	AT1G54770.1	21798944
AT3G50910.1	Bra003624.1-P	AT1G79040.1	21798944
AT3G50910.1	Bra008392.1-P	AT1G79040.1	21798944
AT3G50910.1	Bra035087.1-P	AT1G79040.1	21798944
AT3G50910.1	Bra031109.1-P	AT2G20060.1	21798944
AT3G50910.1	Bra000304.1-P	AT2G43370.1	21798944
AT3G50910.1	Bra001003.1-P	AT3G01550.1	21798944
AT3G50910.1	Bra036793.1-P	AT3G51510.1	21798944
AT3G50910.1	Bra038904.1-P	AT3G51510.1	21798944
AT3G50910.1	Bra003403.1-P	AT3G60200.1	21798944
AT3G50910.1	Bra007514.1-P	AT3G60200.1	21798944
AT3G50910.1	Bra014506.1-P	AT3G60200.1	21798944
AT3G50910.1	Bra007528.1-P	AT3G60360.1	21798944
AT3G50910.1	Bra014494.1-P	AT3G60360.1	21798944
AT3G50910.1	Bra003423.1-P	AT3G60600.1	21798944
AT3G50910.1	Bra007547.1-P	AT3G60600.1	21798944
AT3G50910.1	Bra014481.1-P	AT3G60600.1	21798944
AT3G50910.1	Bra018531.1-P	AT4G02725.1	21798944
AT3G50910.1	Bra036243.1-P	AT4G02725.1	21798944
AT3G50910.1	Bra005866.1-P	AT5G05760.1	21798944
AT3G50910.1	Bra013962.1-P	AT5G17630.1	21798944
AT3G50910.1	Bra024408.1-P	AT5G65683.1	21798944
AT3G50910.1	Bra031849.1-P	AT5G65683.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90677	Canola	nucleus	98.77	98.77
Bra036850.1-P	Field mustard	plastid	78.68	77.35
AT3G50910.1	Thale cress	cytosol	77.21	70.47
Bra037167.1-P	Field mustard	mitochondrion	29.17	56.4
Zm00001d020667_P001	Maize	nucleus	15.93	48.87
KRH08190	Soybean	nucleus	46.08	43.12
GSMUA_Achr6P08980_001	Banana	nucleus	41.91	41.71
GSMUA_Achr2P22980_001	Banana	cytosol, nucleus, peroxisome, plastid	42.16	41.35
KRH76747	Soybean	plastid	44.12	41.28
Solyc02g085000.2.1	Tomato	nucleus	46.08	40.69
KRH28715	Soybean	cytosol	40.44	40.24
VIT_04s0023g02110.t01	Wine grape	endoplasmic reticulum	48.53	39.76
GSMUA_Achr1P12060_001	Banana	plastid	37.75	39.09
PGSC0003DMT400009054	Potato	nucleus, plastid	44.85	38.05
Os02t0704600-01	Rice	nucleus	39.71	35.53
TraesCS6A01G272000.1	Wheat	nucleus	39.22	35.4
TraesCS6D01G252200.1	Wheat	nucleus	38.73	35.19
HORVU6Hr1G068770.1	Barley	nucleus	38.73	34.8
TraesCS6B01G299600.1	Wheat	nucleus	38.48	34.28
OQU85551	Sorghum	cytosol, plastid	37.99	34.22
OQU78405	Sorghum	nucleus	35.54	34.04
Zm00001d038964_P001	Maize	nucleus	35.05	33.65
Zm00001d051562_P001	Maize	plastid	35.78	33.11
Zm00001d017768_P006	Maize	cytosol	38.48	33.05
KRH69884	Soybean	nucleus	44.12	24.86

Protein Annotations

EnsemblPlants:Bra012880.1	EnsemblPlants:Bra012880.1-P	EnsemblPlantsGene:Bra012880	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
PANTHER:PTHR35490	SEG:seg	TMHMM:TMhelix	UniParc:UPI0002540665	UniProt:M4D8S0	MapMan:35.2

Description

AT3G50910 (E=3e-102) | unknown protein

Coordinates

chrA03:+:21808447..21809844

Molecular Weight (calculated)

45551.1 Da

IEP (calculated)

4.995

GRAVY (calculated)

-0.696

Length

408 amino acids

Sequence
(BLAST)

001: MPTFSAIALD RMIEPGASTS ANTTVPSTNS HYYYPKPPIS NADKAKSLNE RRRTFTRPKM SPALYATPDA IPLPNSPSSF PPSPYIINHK SRGPPRLLKS
101: SSEANVASQQ KTVDDEAAEV KASPRRKSTS FSFPVSEPTD EDFGGVVDGP FGSWSNGLEP VTAKAEKESE CEDFYDPGES ASFTSNAEVE VDAGEEGSQR
201: LATPVGEFYD AWDELSTESG MQSSVNNIES ELREIRLSLL MEIEKRKQTE EALEQMQTHW LKLREQLAQV GVFVPIDPTT STNNMNLSEE LRCQLEVARF
301: VSDSLSRGMA KAEAEMVMES RLETKNFEIT RLTDRVHYYE AVNREMSQRN QEAIEVARRK RQKRKKRQRW IWGSIAATIT LGSAALAWSY IPTASKPSSE
401: VSQTLKDD

Best Arabidopsis Sequence Match ( AT3G50910.1 )
(BLAST)

001: MPTFSAIALD RMLEPGASTS VESVPSTTNL FYSKPPISKL EKGKGKLPNE RTVTRPLMSP ALYATPDAIP LPNSPSSFPP SPYIINHKSR GPPRLLKSSS
101: EANVVSSSHQ KTLEEETITA ETDVKVSPRR RSTSFSFPIT EVTEDDYSNG VHARTVGNYN FDGIVDGPVG NWSPLDGKSG NGKSELDNAA NGLERVNGLS
201: EPVPIKTDKE SESEDFYDPG ESASFTSNTD VEGDAGDESS QRLATPVGEF YDAWDELSTD SGMQSSVNNI ESELSEIRLS LLMEIEKRKQ TEEALEQMQI
301: HWQRLREQMA QVGLFVPIDP TASTNNMNLS EELRCQLEIA RFVSDSLGRG MAKAEVEMEM ESMLETKNFE ITRLSDRLHY YEAVNREMSQ RNQEAIEVAR
401: RERQKRKKRQ RWIWGSIAAT ITLGSAALAW SYIPAAKPSS EVSLKDE

Arabidopsis Description

AT3g50910/F18B3_190 [Source:UniProtKB/TrEMBL;Acc:Q94BX2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.