Factsheet for Bra008392.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002403.1-P
Bra006619.1-P
Bra012567.1-P
Bra013361.1-P
Bra020182.1-P
Bra027174.1-P
Bra030034.1-P
Bra032817.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G79040.1	Bra030034.1-P	AT1G27300.1	21798944
AT1G79040.1	Bra032817.1-P	AT1G27300.1	21798944
AT1G79040.1	Bra027174.1-P	AT3G16310.1	21798944
AT1G79040.1	Bra012567.1-P	AT4G19030.1	21798944
AT1G79040.1	Bra013361.1-P	AT4G19030.1	21798944
AT1G79040.1	Bra002403.1-P	AT5G22290.1	21798944
AT1G79040.1	Bra006619.1-P	AT5G22290.1	21798944
AT1G79040.1	Bra020182.1-P	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY22238	Canola	plastid	99.28	99.28
CDY68385	Canola	plastid	99.28	99.28
Bra003624.1-P	Field mustard	plastid	95.65	93.62
Bra035087.1-P	Field mustard	plastid	94.93	93.57
AT1G79040.1	Thale cress	plastid	93.48	92.14
KRH43824	Soybean	nucleus, plastid	78.26	77.7
KRH13645	Soybean	nucleus, plastid	77.54	77.54
VIT_19s0027g00200.t01	Wine grape	plastid	74.64	74.1
GSMUA_Achr9P30450_001	Banana	mitochondrion	68.84	71.97
Zm00001d049387_P001	Maize	plastid	64.49	69.53
EES13497	Sorghum	plastid	63.77	66.67
Solyc12g017250.1.1	Tomato	plastid	63.77	64.23
TraesCS6A01G358100.1	Wheat	plastid	58.7	63.78
TraesCS6D01G340700.1	Wheat	plastid	57.97	62.99
TraesCS6B01G390600.1	Wheat	plastid	57.97	62.99
PGSC0003DMT400005956	Potato	plastid	54.35	62.5
EER95861	Sorghum	plastid	60.87	61.31
Os07t0147550-00	Rice	plastid	61.59	61.15
TraesCS6A01G374400.2	Wheat	plastid	60.87	60.43
Os07t0147500-01	Rice	plastid	57.97	58.39
TraesCS6D01G358900.1	Wheat	plastid	58.7	57.86
TraesCS6B01G412100.1	Wheat	plastid	57.97	57.14
HORVU2Hr1G038940.4	Barley	plastid	57.25	53.38
HORVU2Hr1G038960.1	Barley	plastid	55.8	46.39
TraesCS2D01G253900.2	Wheat	plastid	55.8	44.51
TraesCS2A01G253100.2	Wheat	plastid	50.0	42.59
HORVU6Hr1G085170.3	Barley	plastid	37.68	37.14
TraesCS2B01G272900.1	Wheat	plastid	33.33	17.62

Protein Annotations

MapMan:1.1.1.2.9	EnsemblPlantsGene:Bra008392	EnsemblPlants:Bra008392.1	EnsemblPlants:Bra008392.1-P	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0008150	GO:GO:0008152	GO:GO:0009523	GO:GO:0009579	GO:GO:0009654
GO:GO:0009987	GO:GO:0015979	GO:GO:0016020	GO:GO:0016021	GO:GO:0042651	UniProt:M4CVZ5
PFAM:PF04725	InterPro:PSII_PsbR	PANTHER:PTHR34369	PANTHER:PTHR34369:SF2	TMHMM:TMhelix	UniParc:UPI00025466C4

Description

AT1G79040 (E=2e-068) PSBR | PSBR (photosystem II subunit R)

Coordinates

chrA02:+:15274320..15275156

Molecular Weight (calculated)

14489.5 Da

IEP (calculated)

10.038

GRAVY (calculated)

0.001

Length

138 amino acids

Sequence
(BLAST)

001: MAASVMLSSV TLKPAGFTVE KMSARGLPSL TRTSFKIVAS GVKKIKTDKP FGVNGSMDLR DGVDASGRKG KGYGVYKFVD KYGANVDGYS PIYNEEEWSP
101: GGDVYKGGVT GLAIWAVTLA GILARGALLV YNTSALAQ

Best Arabidopsis Sequence Match ( AT1G79040.1 )
(BLAST)

001: MAASVMLSSV TLKPAGFTVE KTAARGLPSL TRARPSFKIV ASGVKKIKTD KPFGINGSMD LRDGVDASGR KGKGYGVYKY VDKYGANVDG YSPIYNENEW
101: SASGDVYKGG VTGLAIWAVT LAGILAGGAL LVYNTSALAQ

Arabidopsis Description

PSBRPSBR [Source:UniProtKB/TrEMBL;Acc:A0A178WET2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.