Factsheet for TraesCS6A01G374400.2

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 22160430

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G340600.1
TraesCS1D01G342600.1
TraesCS2A01G346700.1
TraesCS2B01G365000.1
TraesCS2D01G345400.1
TraesCS3A01G274800.1
TraesCS3A01G313000.1
TraesCS3B01G158900.1
TraesCS3B01G308400.1
TraesCS3D01G141300.1
TraesCS3D01G274500.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G79040.1	TraesCS2A01G346700.1	AT1G27300.1	21798944
AT1G79040.1	TraesCS2B01G365000.1	AT1G27300.1	21798944
AT1G79040.1	TraesCS2D01G345400.1	AT1G27300.1	21798944
AT1G79040.1	TraesCS1A01G340600.1	AT3G16310.1	21798944
AT1G79040.1	TraesCS1D01G342600.1	AT3G16310.1	21798944
AT1G79040.1	TraesCS3A01G274800.1	AT3G16310.1	21798944
AT1G79040.1	TraesCS3A01G313000.1	AT3G16310.1	21798944
AT1G79040.1	TraesCS3B01G158900.1	AT3G16310.1	21798944
AT1G79040.1	TraesCS3B01G308400.1	AT3G16310.1	21798944
AT1G79040.1	TraesCS3D01G141300.1	AT3G16310.1	21798944
AT1G79040.1	TraesCS3D01G274500.1	AT3G16310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G412100.1	Wheat	plastid	92.81	92.14
TraesCS6D01G358900.1	Wheat	plastid	92.09	91.43
HORVU2Hr1G038940.4	Barley	plastid	89.93	84.46
Os07t0147500-01	Rice	plastid	82.01	83.21
EER95861	Sorghum	plastid	74.82	75.91
VIT_19s0027g00200.t01	Wine grape	plastid	66.91	66.91
Solyc12g017250.1.1	Tomato	plastid	61.15	62.04
KRH43824	Soybean	nucleus, plastid	61.87	61.87
Solyc07g066310.2.1	Tomato	plastid	61.15	61.59
CDY22238	Canola	plastid	61.15	61.59
CDY68385	Canola	plastid	61.15	61.59
Bra008392.1-P	Field mustard	plastid	60.43	60.87
PGSC0003DMT400057257	Potato	plastid	60.43	60.87
KRH13645	Soybean	nucleus, plastid	59.71	60.14
CDX79287	Canola	plastid	60.43	59.57
CDX68011	Canola	plastid	60.43	59.57
Bra003624.1-P	Field mustard	plastid	60.43	59.57
AT1G79040.1	Thale cress	plastid	59.71	59.29
CDY72298	Canola	plastid	59.71	59.29
CDX88501	Canola	plastid	59.71	59.29
Bra035087.1-P	Field mustard	plastid	59.71	59.29
PGSC0003DMT400005956	Potato	plastid	51.08	59.17
TraesCS6A01G358100.1	Wheat	plastid	52.52	57.48
TraesCS2A01G253100.2	Wheat	plastid	61.87	53.09

Protein Annotations

EnsemblPlants:TraesCS6A01G374400.2	EnsemblPlantsGene:TraesCS6A01G374400	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0008150
GO:GO:0008152	GO:GO:0009523	GO:GO:0009579	GO:GO:0009654	GO:GO:0009987	GO:GO:0015979
GO:GO:0016020	GO:GO:0042651	InterPro:PSII_PsbR	PANTHER:PTHR34369	PANTHER:PTHR34369:SF1	PFAM:PF04725
SEG:seg	TMHMM:TMhelix	MapMan:1.1.1.2.9	:	:	:

Description

No Description!

Coordinates

chr6A:+:597284952..597286073

Molecular Weight (calculated)

14373.4 Da

IEP (calculated)

10.306

GRAVY (calculated)

0.089

Length

139 amino acids

Sequence
(BLAST)

001: MSASVMASLV LKPSPSPLLE RAKLRGARPS ARPSLLIVAS KKAKKVQTAQ PYGPGGGVVF KEGVDASGRV AKGKGVYQFA DKYGANVDGY SPIYTPEEWS
101: PSGDVYVGGK TGLFLWAVTL AGILLGGALL VYNTSALAS

Best Arabidopsis Sequence Match ( AT1G79040.1 )
(BLAST)

001: MAASVMLSSV TLKPAGFTVE KTAARGLPSL TRARPSFKIV ASGVKKIKTD KPFGINGSMD LRDGVDASGR KGKGYGVYKY VDKYGANVDG YSPIYNENEW
101: SASGDVYKGG VTGLAIWAVT LAGILAGGAL LVYNTSALAQ

Arabidopsis Description

PSBRPSBR [Source:UniProtKB/TrEMBL;Acc:A0A178WET2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.