Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 8
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G358900.1 | Wheat | plastid | 94.29 | 94.29 |
| TraesCS6A01G374400.2 | Wheat | plastid | 92.14 | 92.81 |
| HORVU2Hr1G038940.4 | Barley | plastid | 87.14 | 82.43 |
| Os07t0147500-01 | Rice | plastid | 78.57 | 80.29 |
| EER95861 | Sorghum | plastid | 74.29 | 75.91 |
| VIT_19s0027g00200.t01 | Wine grape | plastid | 65.0 | 65.47 |
| Solyc12g017250.1.1 | Tomato | plastid | 60.71 | 62.04 |
| KRH43824 | Soybean | nucleus, plastid | 60.0 | 60.43 |
| Solyc07g066310.2.1 | Tomato | plastid | 59.29 | 60.14 |
| PGSC0003DMT400005956 | Potato | plastid | 51.43 | 60.0 |
| PGSC0003DMT400057257 | Potato | plastid | 58.57 | 59.42 |
| KRH13645 | Soybean | nucleus, plastid | 57.86 | 58.7 |
| CDY68385 | Canola | plastid | 57.86 | 58.7 |
| CDY22238 | Canola | plastid | 57.86 | 58.7 |
| Bra008392.1-P | Field mustard | plastid | 57.14 | 57.97 |
| TraesCS6B01G390600.1 | Wheat | plastid | 52.14 | 57.48 |
| CDX79287 | Canola | plastid | 57.14 | 56.74 |
| CDX68011 | Canola | plastid | 57.14 | 56.74 |
| Bra003624.1-P | Field mustard | plastid | 57.14 | 56.74 |
| AT1G79040.1 | Thale cress | plastid | 56.43 | 56.43 |
| CDY72298 | Canola | plastid | 56.43 | 56.43 |
| CDX88501 | Canola | plastid | 56.43 | 56.43 |
| Bra035087.1-P | Field mustard | plastid | 56.43 | 56.43 |
| TraesCS2B01G272900.1 | Wheat | plastid | 48.57 | 26.05 |
Protein Annotations
| EnsemblPlants:TraesCS6B01G412100.1 | EnsemblPlantsGene:TraesCS6B01G412100 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009523 | GO:GO:0009579 | GO:GO:0009654 | GO:GO:0009987 | GO:GO:0015979 |
| GO:GO:0016020 | GO:GO:0042651 | InterPro:PSII_PsbR | PANTHER:PTHR34369 | PANTHER:PTHR34369:SF1 | PFAM:PF04725 |
| SEG:seg | TMHMM:TMhelix | MapMan:1.1.1.2.9 | : | : | : |
Description
No Description!
Coordinates
chr6B:+:685636044..685636931
Molecular Weight (calculated)
14430.6 Da
IEP (calculated)
10.420
GRAVY (calculated)
0.119
Length
140 amino acids
Sequence
(BLAST)
(BLAST)
001: MSASVMASLV LLKPSPSPLL GRAKLRGVRP SARPSLLIVA SKKAKKVQTA QPYGPGGGVV FKEGVDASGR AAKGKGVYQF ADKYGANVDG YSPIYTPEEW
101: SPSGDVYVGG KTGLFLWAVT LSGILLGGAL LVYNTSALAS
101: SPSGDVYVGG KTGLFLWAVT LSGILLGGAL LVYNTSALAS
001: MAASVMLSSV TLKPAGFTVE KTAARGLPSL TRARPSFKIV ASGVKKIKTD KPFGINGSMD LRDGVDASGR KGKGYGVYKY VDKYGANVDG YSPIYNENEW
101: SASGDVYKGG VTGLAIWAVT LAGILAGGAL LVYNTSALAQ
101: SASGDVYKGG VTGLAIWAVT LAGILAGGAL LVYNTSALAQ
Arabidopsis Description
PSBRPSBR [Source:UniProtKB/TrEMBL;Acc:A0A178WET2]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.