Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 6
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G342600.1 | Wheat | plastid | 83.73 | 83.24 |
| HORVU1Hr1G076010.1 | Barley | plastid | 76.33 | 77.95 |
| EES19830 | Sorghum | mitochondrion | 62.72 | 65.03 |
| Os05t0520100-00 | Rice | mitochondrion | 62.72 | 64.05 |
| Zm00001d038803_P001 | Maize | mitochondrion | 60.65 | 63.66 |
| Zm00001d010783_P001 | Maize | plastid | 60.65 | 59.25 |
| TraesCS3A01G274800.1 | Wheat | plastid | 40.53 | 43.77 |
| GSMUA_Achr4P15460_001 | Banana | mitochondrion, plastid | 37.87 | 35.75 |
| VIT_09s0002g03770.t01 | Wine grape | mitochondrion, plastid | 32.54 | 34.7 |
| TraesCS3A01G313000.1 | Wheat | nucleus | 31.66 | 33.44 |
| GSMUA_Achr4P08270_001 | Banana | mitochondrion | 27.51 | 32.63 |
| PGSC0003DMT400006495 | Potato | mitochondrion, plastid | 31.36 | 31.64 |
| AT3G16310.1 | Thale cress | plastid | 30.18 | 31.0 |
| KRH09922 | Soybean | endoplasmic reticulum, nucleus | 29.88 | 30.51 |
| Bra027174.1-P | Field mustard | plastid | 29.88 | 30.24 |
| KRH23409 | Soybean | mitochondrion | 29.59 | 30.21 |
| CDY30157 | Canola | plastid | 29.88 | 23.82 |
| Solyc03g120880.2.1 | Tomato | nucleus | 31.36 | 21.12 |
| CDX97739 | Canola | plastid | 30.18 | 15.29 |
Protein Annotations
| MapMan:23.5.1.1.6.5 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005635 | GO:GO:0006810 | GO:GO:0006913 |
| GO:GO:0008150 | GO:GO:0016020 | GO:GO:0031965 | InterPro:IPR007846 | InterPro:IPR012677 | InterPro:Nucleoporin_NUP53 |
| InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF05172 | PIRSF:PIRSF038119 | PFscan:PS51472 | PANTHER:PTHR21527 | PANTHER:PTHR21527:SF8 |
| InterPro:RBD_domain_sf | InterPro:RRM_NUP35_dom | SUPFAM:SSF54928 | EnsemblPlantsGene:TraesCS1A01G340600 | EnsemblPlants:TraesCS1A01G340600.1 | TIGR:cd12441 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr1A:-:530729041..530731511
Molecular Weight (calculated)
32388.3 Da
IEP (calculated)
10.744
GRAVY (calculated)
-0.355
Length
338 amino acids
Sequence
(BLAST)
(BLAST)
001: MASSPSPSSS RTPAAARRGG RAARQSPFFR DLASPIPSHR GGGSRFASPA XXXXXXXXXX XXXXXXXXXX XXXXXXXXXP TASDLLPVAS SPSPRAGAGS
101: RSPSWDRSRG KASAHGSPMD GVVEPPRKEL LALPPPSSPC TPPPPTATSV AAEAPSPVTP ATEAARTEPA APASEGKADG EEWVTVFGFS LRDTNLVLRE
201: FEKCGVILRH HSGPREGNWI HILYQHSYDA RKALQKNGIQ LCSGVIIGVK HIDPVHRQQL DDRLAGINQG GFMVSLPSKS LVLKSNTGAS NQLGALPRPY
301: DPKSSTNVIR DAGRRTTGSV AAPAKSIVTN VMDLIFGI
101: RSPSWDRSRG KASAHGSPMD GVVEPPRKEL LALPPPSSPC TPPPPTATSV AAEAPSPVTP ATEAARTEPA APASEGKADG EEWVTVFGFS LRDTNLVLRE
201: FEKCGVILRH HSGPREGNWI HILYQHSYDA RKALQKNGIQ LCSGVIIGVK HIDPVHRQQL DDRLAGINQG GFMVSLPSKS LVLKSNTGAS NQLGALPRPY
301: DPKSSTNVIR DAGRRTTGSV AAPAKSIVTN VMDLIFGI
001: MSAAAHRTPK SGRQSLLFQD LASPVSARRG KFSSPGQAAA VSALWRENFG GSDLPPPPMY TLDDRSDFSP ESGIADYSAS PDAKSDRRTP FQSSGKNIVT
101: PGKGKLEASP SFSLLNAQQS QQVSGSPSWW SQSKAGSSTE QDDKGKGSPV EGVVQPGALV TLPPPREVAR PEVQRQIIPT GNLDEEEWVT VYGFSPGDTN
201: LVLREFEKCG MVLKHVPGPR NANWMHILYQ NRSDAHKALN KAGMMINGVV IVGVKPVDPI QKQALNERLN NQGFMPLPPP SSTRNTARPL SRPQYLQNGS
301: AFSPQPSGGA MASPSKSMVS KFFDLMFGV
101: PGKGKLEASP SFSLLNAQQS QQVSGSPSWW SQSKAGSSTE QDDKGKGSPV EGVVQPGALV TLPPPREVAR PEVQRQIIPT GNLDEEEWVT VYGFSPGDTN
201: LVLREFEKCG MVLKHVPGPR NANWMHILYQ NRSDAHKALN KAGMMINGVV IVGVKPVDPI QKQALNERLN NQGFMPLPPP SSTRNTARPL SRPQYLQNGS
301: AFSPQPSGGA MASPSKSMVS KFFDLMFGV
Arabidopsis Description
NUP35Nuclear pore complex protein NUP35 [Source:UniProtKB/Swiss-Prot;Acc:O04326]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.