Factsheet for TraesCS2D01G260000.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 6
endoplasmic reticulum 5
vacuole 4
plasma membrane 4
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G368500.1
TraesCS2B01G385700.2
TraesCS2D01G365300.2
TraesCS4A01G499900.1
TraesCS6A01G237600.1
TraesCS6B01G266100.1
TraesCS6D01G220300.1
TraesCS7A01G000300.1
TraesCS7A01G300700.1
TraesCS7D01G000200.1
TraesCS7D01G296400.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G02990.1	TraesCS4A01G499900.1	AT1G01010.1	21798944
AT2G02990.1	TraesCS7A01G000300.1	AT1G01010.1	21798944
AT2G02990.1	TraesCS7D01G000200.1	AT1G01010.1	21798944
AT2G02990.1	TraesCS2A01G368500.1	AT3G60600.1	21798944
AT2G02990.1	TraesCS2B01G385700.2	AT3G60600.1	21798944
AT2G02990.1	TraesCS2D01G365300.2	AT3G60600.1	21798944
AT2G02990.1	TraesCS6A01G237600.1	AT3G60600.1	21798944
AT2G02990.1	TraesCS6B01G266100.1	AT3G60600.1	21798944
AT2G02990.1	TraesCS6D01G220300.1	AT3G60600.1	21798944
AT2G02990.1	TraesCS7A01G300700.1	AT3G60600.1	21798944
AT2G02990.1	TraesCS7D01G296400.1	AT3G60600.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G278200.1	Wheat	extracellular	99.13	99.13
TraesCS2A01G264000.1	Wheat	extracellular	97.83	97.83
TraesCS6D01G320200.1	Wheat	extracellular	83.91	84.65
HORVU2Hr1G062880.3	Barley	plastid	94.78	82.89
EES15044	Sorghum	extracellular	74.78	76.44
Zm00001d032186_P001	Maize	extracellular	74.35	74.67
Os08t0434100-01	Rice	extracellular	73.91	74.24
KRH70736	Soybean	extracellular	56.09	56.83
GSMUA_Achr5P23330_001	Banana	extracellular	56.09	56.83
GSMUA_Achr7P21030_001	Banana	extracellular	53.48	55.41
KRG89631	Soybean	endoplasmic reticulum, extracellular	53.91	54.63
CDY62181	Canola	extracellular	54.35	54.59
Bra026570.1-P	Field mustard	extracellular	54.35	54.59
AT2G02990.1	Thale cress	extracellular	54.35	54.35
CDY09344	Canola	extracellular	54.78	54.31
KRH74869	Soybean	endoplasmic reticulum, extracellular, plasma membrane	55.65	53.78
CDY45186	Canola	extracellular	53.48	53.71
Bra024795.1-P	Field mustard	extracellular	53.48	53.71
CDY03023	Canola	extracellular	53.04	53.28
GSMUA_Achr4P00460_001	Banana	endoplasmic reticulum, extracellular, plastid	52.61	45.83
TraesCS2D01G163100.1	Wheat	extracellular	43.04	42.49
TraesCS2D01G163200.1	Wheat	extracellular	43.91	41.91
TraesCS2D01G163300.1	Wheat	extracellular	43.91	41.91
TraesCS1D01G149800.1	Wheat	extracellular	34.35	32.24
TraesCS1D01G149700.1	Wheat	endoplasmic reticulum, extracellular	30.43	27.78
TraesCS3D01G392200.1	Wheat	endoplasmic reticulum, extracellular, vacuole	32.17	26.15
TraesCS3D01G392300.1	Wheat	extracellular	31.74	25.98

Protein Annotations

Gene3D:3.90.730.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0004518	GO:GO:0005488	GO:GO:0016787	GO:GO:0033897	InterPro:IPR036430	PFAM:PF00445
ScanProsite:PS00530	ScanProsite:PS00531	PFscan:PS51257	PANTHER:PTHR11240	PANTHER:PTHR11240:SF35	InterPro:RNase_T2-like
InterPro:RNase_T2-like_sf	InterPro:RNase_T2_His_AS_1	InterPro:RNase_T2_His_AS_2	InterPro:Ribonuclease_T2_eukaryotic	SUPFAM:SSF55895	SignalP:SignalP-noTM
EnsemblPlantsGene:TraesCS2D01G260000	EnsemblPlants:TraesCS2D01G260000.1	TIGR:cd01061	:	:	:

Description

No Description!

Coordinates

chr2D:-:316267943..316269114

Molecular Weight (calculated)

25190.5 Da

IEP (calculated)

6.219

GRAVY (calculated)

-0.279

Length

230 amino acids

Sequence
(BLAST)

001: MRLQCSLVLL IALSVGCAAA QESGKQAGYD FFYLVLQWPG SYCDTKQSCC YPRSGKPAAD FGIHGLWPNR DDGSYPQNCN PDSAFDPSKV SDILSSLRSS
101: WPTLACPTND GLRFWAHEWE KHGTCAQNLF NEHGYFQAAL RLRGQLRVLD ALATAGISPD GGYYTMGAIK GAIQEGTGFA PHVDCNRDES GNSQLFQLYF
201: CVHADASRFV ECPVQPGGRP CGNRIEFPAF

Best Arabidopsis Sequence Match ( AT1G26820.1 )
(BLAST)

001: MKFFIFILAL QQLYVQSFAQ DFDFFYFVLQ WPGAYCDSRH SCCYPQTGKP AADFGIHGLW PNYKTGGWPQ NCNPDSRFDD LRVSDLMSDL QREWPTLSCP
101: SNDGMKFWTH EWEKHGTCAE SELDQHDYFE AGLKLKQKAN LLHALTNAGI KPDDKFYEMK DIENTIKQVV GFAPGIECNK DSSHNSQLYQ IYLCVDTSAS
201: KFINCPVMPH GRCDSRVQFP KF

Arabidopsis Description

RNS3Ribonuclease 3 [Source:UniProtKB/Swiss-Prot;Acc:P42815]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.