CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 6
vacuole 6
plasma membrane 5
golgi 5
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular
Any Predictor:	nucleus, secretory
BaCelLo:	secretory
EpiLoc:	vacuole
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH06324
KRH06326
KRH06327
KRH11076
KRH21197
KRH22653
KRH26664
KRH42923
KRH42926
KRH45251
KRH47747
KRH47748
KRH47750
KRH59035
KRH59036
KRH65384
KRH76164

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G02990.1	KRH06324	AT1G01010.1	21798944
AT2G02990.1	KRH06326	AT1G01010.1	21798944
AT2G02990.1	KRH06327	AT1G01010.1	21798944
AT2G02990.1	KRH47747	AT1G01010.1	21798944
AT2G02990.1	KRH47748	AT1G01010.1	21798944
AT2G02990.1	KRH47750	AT1G01010.1	21798944
AT2G02990.1	KRH65384	AT3G60600.1	21798944
AT2G02990.1	KRH76164	AT3G60600.1	21798944
AT2G02990.1	KRH11076	AT4G19030.1	21798944
AT2G02990.1	KRH21197	AT4G19030.1	21798944
AT2G02990.1	KRH42923	AT4G19030.1	21798944
AT2G02990.1	KRH42926	AT4G19030.1	21798944
AT2G02990.1	KRH45251	AT4G19030.1	21798944
AT2G02990.1	KRH59035	AT4G19030.1	21798944
AT2G02990.1	KRH59036	AT4G19030.1	21798944
AT2G02990.1	KRH22653	AT5G22290.1	21798944
AT2G02990.1	KRH26664	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH70736	Soybean	extracellular	80.18	80.18
KRH74869	Soybean	endoplasmic reticulum, extracellular, plasma membrane	79.74	76.05
Bra026570.1-P	Field mustard	extracellular	67.84	67.25
CDY62181	Canola	extracellular	67.84	67.25
CDY09344	Canola	extracellular	67.84	66.38
Bra024795.1-P	Field mustard	extracellular	66.08	65.5
CDY45186	Canola	extracellular	66.08	65.5
AT2G02990.1	Thale cress	extracellular	66.08	65.22
KRH74871	Soybean	endoplasmic reticulum	64.76	65.04
GSMUA_Achr7P21030_001	Banana	extracellular	63.44	64.86
CDY03023	Canola	extracellular	65.2	64.63
KRH70737	Soybean	extracellular	63.88	64.16
GSMUA_Achr5P23330_001	Banana	extracellular	63.88	63.88
TraesCS6D01G320200.1	Wheat	extracellular	60.35	60.09
TraesCS6A01G339600.1	Wheat	extracellular	59.91	59.65
TraesCS6B01G370600.1	Wheat	extracellular	58.59	58.33
EES15044	Sorghum	extracellular	57.27	57.78
Zm00001d032186_P001	Maize	extracellular	56.39	55.9
Os08t0434100-01	Rice	extracellular	55.51	55.02
GSMUA_Achr4P00460_001	Banana	endoplasmic reticulum, extracellular, plastid	63.44	54.55
HORVU0Hr1G017230.3	Barley	extracellular	54.63	54.15
HORVU6Hr1G081930.1	Barley	cytosol	18.06	53.95
TraesCS2D01G260000.1	Wheat	extracellular	54.63	53.91
TraesCS2B01G278200.1	Wheat	extracellular	54.19	53.48
TraesCS2A01G264000.1	Wheat	extracellular	54.19	53.48
KRG89632	Soybean	extracellular	52.86	50.42
HORVU2Hr1G062880.3	Barley	plastid	55.07	47.53
HORVU6Hr1G081950.3	Barley	extracellular	40.97	45.81
KRH67902	Soybean	extracellular	33.04	32.47
KRH06524	Soybean	extracellular	37.89	31.97
KRH47963	Soybean	nucleus	37.89	31.85
KRH70036	Soybean	extracellular	27.31	26.84
KRH70037	Soybean	extracellular	26.87	26.07
KRH70040	Soybean	extracellular	26.43	25.97
KRH70039	Soybean	extracellular	26.43	25.97

Protein Annotations

EntrezGene:100305644	Gene3D:3.90.730.10	MapMan:35.1	EMBL:ACUP02012232	EMBL:BT089350	UniProt:C6SW07
EnsemblPlantsGene:GLYMA_20G036100	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518
GO:GO:0005488	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787
GO:GO:0033897	GO:GO:0090502	InterPro:IPR036430	EnsemblPlants:KRG89631	ProteinID:KRG89631	ProteinID:KRG89631.1
PFAM:PF00445	ScanProsite:PS00530	ScanProsite:PS00531	PANTHER:PTHR11240	PANTHER:PTHR11240:SF35	InterPro:RNase_T2-like
InterPro:RNase_T2-like_sf	InterPro:RNase_T2_His_AS_1	InterPro:RNase_T2_His_AS_2	InterPro:Ribonuclease_T2_eukaryotic	SUPFAM:SSF55895	SignalP:SignalP-noTM
UniParc:UPI0001B159EC	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr20:-:5178569..5181066

Molecular Weight (calculated)

25502.8 Da

IEP (calculated)

5.563

GRAVY (calculated)

-0.364

Length

227 amino acids

Sequence
(BLAST)

001: MESKESIFVK LLLILHLSVL CVSQDFDFYY FVQQWPGSYC DTTQNSCCYP TTGKPAADFG IHGLWPNYKD GSYPSNCDSN NRFQPSQISD LTSSLQRNWP
101: TLACPSGNGV QFWTHEWEKH GTCSQSVLKQ HDYFETALDL KQRANLLQAL TNAGIQPDGG FYSLSSIKGA IKNAIGYTPY IECNVDTSRN NQLYQVYLCV
201: DTSGSNFIEC PVFPRGKCGS QVEFPTF

Best Arabidopsis Sequence Match ( AT2G02990.1 )
(BLAST)

001: MKILLASLCL ISLLVILPSV FSASSSSEDF DFFYFVQQWP GSYCDTQKKC CYPNSGKPAA DFGIHGLWPN YKDGTYPSNC DASKPFDSST ISDLLTSMKK
101: SWPTLACPSG SGEAFWEHEW EKHGTCSESV IDQHEYFQTA LNLKQKTNLL GALTKAGINP DGKSYSLESI RDSIKESIGF TPWVECNRDG SGNSQLYQVY
201: LCVDRSGSGL IECPVFPHGK CGAEIEFPSF

Arabidopsis Description

RNS1Ribonuclease 1 [Source:UniProtKB/Swiss-Prot;Acc:P42813]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.