CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 1
vacuole 5
extracellular 8
endoplasmic reticulum 4
plasma membrane 4
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	plastid, secretory
BaCelLo:	plastid
EpiLoc:	vacuole
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH70736	Soybean	extracellular	52.1	54.63
VIT_01s0010g00450.t01	Wine grape	extracellular	21.43	54.26
GSMUA_Achr7P21030_001	Banana	extracellular	50.42	54.05
KRH70737	Soybean	extracellular	50.42	53.1
KRH74871	Soybean	endoplasmic reticulum	50.42	53.1
KRG89631	Soybean	endoplasmic reticulum, extracellular	50.42	52.86
KRH74869	Soybean	endoplasmic reticulum, extracellular, plasma membrane	52.52	52.52
GSMUA_Achr5P23330_001	Banana	extracellular	49.58	51.98
VIT_01s0026g02520.t01	Wine grape	extracellular	48.74	51.33
VIT_01s0010g01250.t01	Wine grape	cytosol, nucleus, plastid	28.57	51.13
Solyc04g005640.2.1	Tomato	extracellular	47.48	47.08
GSMUA_Achr4P00460_001	Banana	endoplasmic reticulum, extracellular, plastid	49.58	44.7
AT1G14210.1	Thale cress	extracellular	45.38	43.72
Solyc05g013210.2.1	Tomato	cytosol	22.69	43.55
CDY33763	Canola	extracellular	44.12	43.03
PGSC0003DMT400007421	Potato	cytosol	39.08	42.66
Bra026847.1-P	Field mustard	extracellular	43.7	42.62
CDX81620	Canola	extracellular	37.82	41.28
PGSC0003DMT400007343	Potato	extracellular, mitochondrion, nucleus	16.81	37.38
KRH67902	Soybean	extracellular	30.25	31.17
KRH47963	Soybean	nucleus	31.51	27.78
KRH06524	Soybean	extracellular	30.67	27.14
KRH70039	Soybean	extracellular	24.37	25.11
KRH70036	Soybean	extracellular	24.37	25.11
KRH70040	Soybean	extracellular	23.95	24.68
KRH70037	Soybean	extracellular	22.27	22.65

Protein Annotations

EntrezGene:100527255	Gene3D:3.90.730.10	MapMan:35.1	EMBL:ACUP02012232	EMBL:BT092085	UniProt:C6T3S4
EnsemblPlantsGene:GLYMA_20G036200	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518
GO:GO:0005488	GO:GO:0006139	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009628
GO:GO:0009651	GO:GO:0009987	GO:GO:0016787	GO:GO:0033897	GO:GO:0090502	InterPro:IPR036430
EnsemblPlants:KRG89632	ProteinID:KRG89632	ProteinID:KRG89632.1	PFAM:PF00445	ScanProsite:PS00530	ScanProsite:PS00531
PANTHER:PTHR11240	PANTHER:PTHR11240:SF35	InterPro:RNase_T2-like	InterPro:RNase_T2-like_sf	InterPro:RNase_T2_His_AS_1	InterPro:RNase_T2_His_AS_2
InterPro:Ribonuclease_T2_eukaryotic	SUPFAM:SSF55895	UniParc:UPI0001B1560E	:	:	:

Description

hypothetical protein

Coordinates

chr20:-:5184848..5187149

Molecular Weight (calculated)

26823.9 Da

IEP (calculated)

6.860

GRAVY (calculated)

-0.213

Length

238 amino acids

Sequence
(BLAST)

001: MISISTIAIK LLMLLSFGNI WISRDFDFFY FVQQWPGSFC DTKKSCCFPL TGKPVSNFSI HGLWPNFSNG SFPSNCNIAE NPFNQSKITD LIPRAEKGWA
101: SLSCAGSKKT ENNKTSSDNT RFWKHEWDKH GTCSDLILDQ HAYFEATLNL KDRVDLLQIL QYNGIKPDGN LYSIVNITKA ITQAIGLEPG ITCNTDPSGN
201: RQLNEIYLCA DKYASSFIEC PILPSRKSCT DMVEFPIF

Best Arabidopsis Sequence Match ( AT1G14210.1 )
(BLAST)

001: MRGIIIVSLL ILQSLVVSSS QTEPDFNFFY WVNYWPGAIC DSQKGCCPPT KGNTASDFII HGLWPQFNNG TWPAFCDQTN LFDISKISDL VCQMEKKWTE
101: WGVWACPSNE TNLWEHEWNK HGTCVQSIFD QHSYFRTNLK FKHKVHLLNI LIQKGIKPND GFYSLDEIKN AIKCAIGFAP GIECNEDVKG NKQLFQIYIC
201: LDNYAKEFVE CPYVPDKSCA SKIKFPSLPE RDSLNESLSV MSSVSTT

Arabidopsis Description

Ribonuclease T2 family protein [Source:UniProtKB/TrEMBL;Acc:F4HUG9]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.