Factsheet for VIT_01s0026g02520.t01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 9
endoplasmic reticulum 5
vacuole 6
plasma membrane 5
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
BaCelLo:	secretory
EpiLoc:	vacuole
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_01s0010g00450.t01	Wine grape	extracellular	41.59	100.0
VIT_01s0010g01250.t01	Wine grape	cytosol, nucleus, plastid	46.9	79.7
Solyc05g007950.2.1	Tomato	extracellular	69.03	67.83
GSMUA_Achr7P21030_001	Banana	extracellular	64.6	65.77
GSMUA_Achr5P23330_001	Banana	extracellular	63.72	63.44
GSMUA_Achr4P00460_001	Banana	endoplasmic reticulum, extracellular, plastid	64.6	55.3
PGSC0003DMT400007421	Potato	cytosol	48.67	50.46
KRG89632	Soybean	extracellular	51.33	48.74
AT1G14210.1	Thale cress	extracellular	47.35	43.32
CDY33763	Canola	extracellular	46.46	43.03
Bra026847.1-P	Field mustard	extracellular	46.02	42.62
CDX81620	Canola	extracellular	40.27	41.74
PGSC0003DMT400007343	Potato	extracellular, mitochondrion, nucleus	18.58	39.25
VIT_00s1339g00010.t01	Wine grape	cytosol	10.18	22.12

Protein Annotations

EntrezGene:100249919	wikigene:100249919	EntrezGene:100263380	wikigene:100263380	Gene3D:3.90.730.10	MapMan:35.1
ProteinID:CBI27389	ProteinID:CBI27389.3	ProteinID:CBI31950	ProteinID:CBI31950.3	UniProt:D7TN77	EMBL:FN595754
EMBL:FN596002	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518
GO:GO:0005488	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787
GO:GO:0033897	GO:GO:0090502	InterPro:IPR036430	EntrezGene:LOC100249919	wikigene:LOC100249919	EntrezGene:LOC100263380
wikigene:LOC100263380	PFAM:PF00445	ScanProsite:PS00530	ScanProsite:PS00531	PANTHER:PTHR11240	PANTHER:PTHR11240:SF35
InterPro:RNase_T2-like	InterPro:RNase_T2-like_sf	InterPro:RNase_T2_His_AS_1	InterPro:RNase_T2_His_AS_2	InterPro:Ribonuclease_T2_eukaryotic	SUPFAM:SSF55895
SignalP:SignalP-noTM	TIGR:TC52951	UniParc:UPI00015CBBCA	ArrayExpress:VIT_01s0026g02520	EnsemblPlantsGene:VIT_01s0026g02520	EnsemblPlants:VIT_01s0026g02520.t01
unigene:Vvi.5448	RefSeq:XP_002275271	RefSeq:XP_002275271.1	:	:	:

Description

No Description!

Coordinates

chr1:+:12137487..12138936

Molecular Weight (calculated)

25512.9 Da

IEP (calculated)

4.486

GRAVY (calculated)

-0.360

Length

226 amino acids

Sequence
(BLAST)

001: MKSNQSFFIK LLIIQCLTVV CFSQDFDFFY LVQQWPGSYC DSKQSCCYPT TGKPDADFGI HGLWPNYRDG SYPSNCDSNN PYDESEISDL IRSMQEEWPT
101: LACPSGNGSK FWAHEWDKHG TCSESVLSQY QYFEAALDLK KDVDLVQILK KAGIRANGES YPLYDIKDAI KDAVGVTPWI ECNVDSSGNS QLYQVYLCVD
201: TSGKNIIECP VMPRGKCGSR IEFPAF

Best Arabidopsis Sequence Match ( AT2G02990.1 )
(BLAST)

001: MKILLASLCL ISLLVILPSV FSASSSSEDF DFFYFVQQWP GSYCDTQKKC CYPNSGKPAA DFGIHGLWPN YKDGTYPSNC DASKPFDSST ISDLLTSMKK
101: SWPTLACPSG SGEAFWEHEW EKHGTCSESV IDQHEYFQTA LNLKQKTNLL GALTKAGINP DGKSYSLESI RDSIKESIGF TPWVECNRDG SGNSQLYQVY
201: LCVDRSGSGL IECPVFPHGK CGAEIEFPSF

Arabidopsis Description

RNS1Ribonuclease 1 [Source:UniProtKB/Swiss-Prot;Acc:P42813]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.