Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, plastid, extracellular
Predictor Summary:
Predictor Summary:
- nucleus 1
- vacuole 2
- plastid 2
- endoplasmic reticulum 2
- extracellular 3
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr7P21030_001 | Banana | extracellular | 64.02 | 76.13 |
| GSMUA_Achr5P23330_001 | Banana | extracellular | 57.58 | 66.96 |
| VIT_01s0010g01250.t01 | Wine grape | cytosol, nucleus, plastid | 32.58 | 64.66 |
| VIT_01s0026g02520.t01 | Wine grape | extracellular | 55.3 | 64.6 |
| Solyc05g007950.2.1 | Tomato | extracellular | 56.06 | 64.35 |
| KRG89631 | Soybean | endoplasmic reticulum, extracellular | 54.55 | 63.44 |
| KRH70736 | Soybean | extracellular | 53.79 | 62.56 |
| Bra024795.1-P | Field mustard | extracellular | 54.17 | 62.45 |
| CDY45186 | Canola | extracellular | 54.17 | 62.45 |
| VIT_01s0010g00450.t01 | Wine grape | extracellular | 21.97 | 61.7 |
| CDY03023 | Canola | extracellular | 53.41 | 61.57 |
| KRH74871 | Soybean | endoplasmic reticulum | 51.52 | 60.18 |
| AT2G02990.1 | Thale cress | extracellular | 52.27 | 60.0 |
| CDY09344 | Canola | extracellular | 52.65 | 59.91 |
| CDY62181 | Canola | extracellular | 51.89 | 59.83 |
| Bra026570.1-P | Field mustard | extracellular | 51.89 | 59.83 |
| KRH74869 | Soybean | endoplasmic reticulum, extracellular, plasma membrane | 53.03 | 58.82 |
| CDY40267 | Canola | extracellular | 49.24 | 58.56 |
| Bra012439.1-P | Field mustard | extracellular | 49.24 | 58.56 |
| CDY20583 | Canola | extracellular | 48.86 | 58.11 |
| AT1G26820.1 | Thale cress | extracellular | 47.73 | 56.76 |
| KRH70737 | Soybean | extracellular | 48.11 | 56.19 |
| AT1G14220.1 | Thale cress | extracellular | 47.73 | 55.26 |
| EES15044 | Sorghum | extracellular | 46.97 | 55.11 |
| CDY33761 | Canola | extracellular | 47.35 | 55.07 |
| Bra026846.1-P | Field mustard | extracellular | 47.35 | 55.07 |
| TraesCS6A01G339600.1 | Wheat | extracellular | 46.59 | 53.95 |
| TraesCS6D01G320200.1 | Wheat | extracellular | 46.21 | 53.51 |
| Zm00001d032186_P001 | Maize | extracellular | 46.21 | 53.28 |
| Solyc05g007940.2.1 | Tomato | extracellular | 47.73 | 53.16 |
| TraesCS2B01G278200.1 | Wheat | extracellular | 46.21 | 53.04 |
| Os08t0434100-01 | Rice | extracellular | 45.83 | 52.84 |
| TraesCS2D01G260000.1 | Wheat | extracellular | 45.83 | 52.61 |
| CDX84041 | Canola | extracellular | 45.08 | 52.19 |
| CDX96863 | Canola | extracellular | 45.08 | 52.19 |
| TraesCS6B01G370600.1 | Wheat | extracellular | 44.7 | 51.75 |
| TraesCS2A01G264000.1 | Wheat | extracellular | 45.08 | 51.74 |
| CDY33762 | Canola | peroxisome | 42.05 | 51.15 |
| Solyc05g013210.2.1 | Tomato | cytosol | 23.86 | 50.81 |
| Solyc04g005640.2.1 | Tomato | extracellular | 45.83 | 50.42 |
| KRG89632 | Soybean | extracellular | 44.7 | 49.58 |
| HORVU6Hr1G081930.1 | Barley | cytosol | 14.02 | 48.68 |
| HORVU0Hr1G017230.3 | Barley | extracellular | 42.05 | 48.47 |
| PGSC0003DMT400007421 | Potato | cytosol | 39.77 | 48.17 |
| HORVU2Hr1G062880.3 | Barley | plastid | 45.83 | 46.01 |
| Bra026847.1-P | Field mustard | extracellular | 39.39 | 42.62 |
| CDY33763 | Canola | extracellular | 39.02 | 42.21 |
| AT1G14210.1 | Thale cress | extracellular | 39.39 | 42.11 |
| HORVU6Hr1G081950.3 | Barley | extracellular | 31.82 | 41.38 |
| CDX81620 | Canola | extracellular | 32.95 | 39.91 |
| PGSC0003DMT400007343 | Potato | extracellular, mitochondrion, nucleus | 15.53 | 38.32 |
| GSMUA_Achr4P08950_001 | Banana | extracellular | 32.2 | 35.27 |
| GSMUA_Achr9P02260_001 | Banana | extracellular, plasma membrane | 26.89 | 28.4 |
| GSMUA_Achr9P07920_001 | Banana | plasma membrane | 25.0 | 25.1 |
| GSMUA_Achr7P23750_001 | Banana | mitochondrion | 28.41 | 25.0 |
| GSMUA_Achr9P07930_001 | Banana | extracellular, plastid, vacuole | 26.89 | 23.91 |
| GSMUA_Achr9P07950_001 | Banana | extracellular | 23.48 | 21.23 |
| GSMUA_Achr9P07940_001 | Banana | mitochondrion | 24.62 | 19.82 |
| CDX81621 | Canola | extracellular, nucleus, peroxisome | 47.35 | 19.53 |
Protein Annotations
| Gene3D:3.90.730.10 | MapMan:35.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003824 |
| GO:GO:0004518 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
| GO:GO:0016787 | GO:GO:0033897 | GO:GO:0090502 | EnsemblPlantsGene:GSMUA_Achr4G00460_001 | EnsemblPlants:GSMUA_Achr4P00460_001 | EnsemblPlants:GSMUA_Achr4T00460_001 |
| InterPro:IPR036430 | UniProt:M0SJW3 | PFAM:PF00445 | ScanProsite:PS00530 | ScanProsite:PS00531 | PANTHER:PTHR11240 |
| PANTHER:PTHR11240:SF35 | InterPro:RNase_T2-like | InterPro:RNase_T2-like_sf | InterPro:RNase_T2_His_AS_1 | InterPro:RNase_T2_His_AS_2 | InterPro:Ribonuclease_T2_eukaryotic |
| SUPFAM:SSF55895 | UniParc:UPI0002961056 | SEG:seg | : | : | : |
Description
Extracellular ribonuclease LE [Source:GMGC_GENE;Acc:GSMUA_Achr4G00460_001]
Coordinates
chr4:-:358080..359226
Molecular Weight (calculated)
29674.0 Da
IEP (calculated)
6.069
GRAVY (calculated)
-0.273
Length
264 amino acids
Sequence
(BLAST)
(BLAST)
001: MSPYSSCQHG YAIHLPNALS LSLYVGQHVE GVSHPFRPNM KLLRFSAFLL LLPLSAVAST AHDFDFFYFV QQWPGSYCDT RQSCCYPSTG KPASDFGIHG
101: LWPNYNDGSY PSNCDSDWPY DASEMSDLMG MMQMNWPTLA CPSGDGSSFW SHEWRKHGTC SESLLDQRSY FQAALYLKKQ VDLLKVLQDA GIRPDGGFYS
201: LRGIAGAIRE AIGYTPGIQC NVDESGNRQL YQIYLCVDTW GKELIECPVF PRSKCSSRVE FPPF
101: LWPNYNDGSY PSNCDSDWPY DASEMSDLMG MMQMNWPTLA CPSGDGSSFW SHEWRKHGTC SESLLDQRSY FQAALYLKKQ VDLLKVLQDA GIRPDGGFYS
201: LRGIAGAIRE AIGYTPGIQC NVDESGNRQL YQIYLCVDTW GKELIECPVF PRSKCSSRVE FPPF
001: MKILLASLCL ISLLVILPSV FSASSSSEDF DFFYFVQQWP GSYCDTQKKC CYPNSGKPAA DFGIHGLWPN YKDGTYPSNC DASKPFDSST ISDLLTSMKK
101: SWPTLACPSG SGEAFWEHEW EKHGTCSESV IDQHEYFQTA LNLKQKTNLL GALTKAGINP DGKSYSLESI RDSIKESIGF TPWVECNRDG SGNSQLYQVY
201: LCVDRSGSGL IECPVFPHGK CGAEIEFPSF
101: SWPTLACPSG SGEAFWEHEW EKHGTCSESV IDQHEYFQTA LNLKQKTNLL GALTKAGINP DGKSYSLESI RDSIKESIGF TPWVECNRDG SGNSQLYQVY
201: LCVDRSGSGL IECPVFPHGK CGAEIEFPSF
Arabidopsis Description
RNS1Ribonuclease 1 [Source:UniProtKB/Swiss-Prot;Acc:P42813]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.