Factsheet for Solyc05g007940.2.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 9
golgi 5
plasma membrane 5
endoplasmic reticulum 5
vacuole 6

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
BaCelLo:	secretory
EpiLoc:	vacuole
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

extracellular: 29876421

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH74871	Soybean	endoplasmic reticulum	58.65	61.5
KRH70737	Soybean	extracellular	58.23	61.06
Solyc05g007950.2.1	Tomato	extracellular	58.23	60.0
AT1G26820.1	Thale cress	extracellular	54.85	58.56
Bra012439.1-P	Field mustard	extracellular	54.85	58.56
CDY20583	Canola	extracellular	54.85	58.56
CDY40267	Canola	extracellular	54.85	58.56
GSMUA_Achr7P21030_001	Banana	extracellular	54.01	57.66
GSMUA_Achr5P23330_001	Banana	extracellular	54.43	56.83
Solyc04g005640.2.1	Tomato	extracellular	56.12	55.42
AT1G14220.1	Thale cress	extracellular	53.16	55.26
CDX96863	Canola	extracellular	51.05	53.07
CDY33761	Canola	extracellular	50.63	52.86
Bra026846.1-P	Field mustard	extracellular	50.63	52.86
CDX84041	Canola	extracellular	50.63	52.63
Solyc05g013210.2.1	Tomato	cytosol	26.16	50.0
CDY33762	Canola	peroxisome	45.15	49.31
GSMUA_Achr4P00460_001	Banana	endoplasmic reticulum, extracellular, plastid	53.16	47.73
Solyc09g020110.2.1	Tomato	plastid	29.96	27.31
Solyc01g055200.1.1	Tomato	extracellular	24.89	26.7
Solyc06g082890.2.1	Tomato	extracellular, plasma membrane	28.27	24.28
CDX81621	Canola	extracellular, nucleus, peroxisome	47.26	17.5

Protein Annotations

Gene3D:3.90.730.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0004518	GO:GO:0004519	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787
GO:GO:0033897	GO:GO:0090305	GO:GO:0090502	InterPro:IPR036430	UniProt:K4BWW9	PFAM:PF00445
ScanProsite:PS00530	ScanProsite:PS00531	PANTHER:PTHR11240	PANTHER:PTHR11240:SF35	InterPro:RNase_T2-like	InterPro:RNase_T2-like_sf
InterPro:RNase_T2_His_AS_1	InterPro:RNase_T2_His_AS_2	InterPro:Ribonuclease_T2_eukaryotic	SUPFAM:SSF55895	SignalP:SignalP-noTM	EnsemblPlantsGene:Solyc05g007940.2
EnsemblPlants:Solyc05g007940.2.1	UniParc:UPI0002766083	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr5:-:2366284..2369405

Molecular Weight (calculated)

26989.7 Da

IEP (calculated)

6.076

GRAVY (calculated)

-0.474

Length

237 amino acids

Sequence
(BLAST)

001: MMKSQKKLLI KIIVVQCLLV LCVASQDFDF FYFVQQWPAS YCDTRRSCCY PTTGKPDEDF SIHGLWPNYK DGKWPQNCDR ESSLDESEFS DLISTMEKNW
101: PSLACPSSDG LKFWSHEWLK HGTCSALNQH AYFQTALDFK TKSNLLQNLN NAGIKPRNGD YYGVESIKKA IEKGVGHTPF IECNVDSQGN HQLYQVYLCV
201: DSSASKFIDC PIFPHGGKCG SKIEFPSFST NDDHDEF

Best Arabidopsis Sequence Match ( AT2G02990.1 )
(BLAST)

001: MKILLASLCL ISLLVILPSV FSASSSSEDF DFFYFVQQWP GSYCDTQKKC CYPNSGKPAA DFGIHGLWPN YKDGTYPSNC DASKPFDSST ISDLLTSMKK
101: SWPTLACPSG SGEAFWEHEW EKHGTCSESV IDQHEYFQTA LNLKQKTNLL GALTKAGINP DGKSYSLESI RDSIKESIGF TPWVECNRDG SGNSQLYQVY
201: LCVDRSGSGL IECPVFPHGK CGAEIEFPSF

Arabidopsis Description

RNS1Ribonuclease 1 [Source:UniProtKB/Swiss-Prot;Acc:P42813]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.