Factsheet for Solyc06g082890.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 5
plasma membrane 6
golgi 5
nucleus 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, plasma membrane
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	plasma membrane
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400071177	Potato	cytosol, nucleus, peroxisome	60.51	69.87
Solyc09g020110.2.1	Tomato	plastid	65.58	69.62
VIT_00s1339g00010.t01	Wine grape	cytosol	21.74	57.69
CDY60490	Canola	extracellular, plasma membrane, vacuole	52.9	57.03
KRH06524	Soybean	extracellular	55.43	56.88
KRH47963	Soybean	nucleus	54.71	55.93
AT2G39780.1	Thale cress	extracellular	52.17	55.6
Bra032671.1-P	Field mustard	extracellular	51.09	53.21
CDY39709	Canola	extracellular	51.09	53.21
GSMUA_Achr7P23750_001	Banana	mitochondrion	47.1	43.33
TraesCS3A01G398300.1	Wheat	endoplasmic reticulum, extracellular	40.58	42.91
OQU88033	Sorghum	endoplasmic reticulum, extracellular, vacuole	42.03	42.03
TraesCS3B01G430300.1	Wheat	unclear	40.94	40.5
TraesCS3D01G392300.1	Wheat	extracellular	40.58	39.86
Os01t0897300-01	Rice	extracellular	39.13	38.85
TraesCS3A01G398200.1	Wheat	endoplasmic reticulum, extracellular, vacuole	38.77	37.81
TraesCS3D01G392200.1	Wheat	endoplasmic reticulum, extracellular, vacuole	38.77	37.81
TraesCS3B01G430200.1	Wheat	endoplasmic reticulum, extracellular, mitochondrion	38.41	37.46
HORVU3Hr1G089550.5	Barley	endoplasmic reticulum, extracellular, vacuole	38.04	37.1
HORVU3Hr1G089580.5	Barley	cytosol, extracellular	40.22	36.16
KXG33898	Sorghum	extracellular, plasma membrane	38.77	35.08
HORVU6Hr1G017960.3	Barley	plastid	21.74	34.48
Os01t0897200-01	Rice	extracellular, vacuole	34.42	33.45
Solyc04g005640.2.1	Tomato	extracellular	26.45	30.42
Solyc05g007950.2.1	Tomato	extracellular	25.0	30.0
Solyc05g013210.2.1	Tomato	cytosol	13.41	29.84
Solyc05g007940.2.1	Tomato	extracellular	24.28	28.27
Zm00001d042511_P005	Maize	golgi, mitochondrion, plasma membrane	34.06	26.63
OQU81225	Sorghum	cytosol	11.23	25.2
Solyc01g055200.1.1	Tomato	extracellular	18.48	23.08
Zm00001d042512_P006	Maize	endoplasmic reticulum, extracellular, vacuole	25.36	19.61

Protein Annotations

Gene3D:3.90.730.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0004518	GO:GO:0005488	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016787	GO:GO:0033897	GO:GO:0090502	InterPro:IPR036430	UniProt:K4CAE4	PFAM:PF00445
PANTHER:PTHR11240	PANTHER:PTHR11240:SF37	InterPro:RNase_T2-like	InterPro:RNase_T2-like_sf	InterPro:Ribonuclease_T2_eukaryotic	SUPFAM:SSF55895
SignalP:SignalP-noTM	EnsemblPlantsGene:Solyc06g082890.2	EnsemblPlants:Solyc06g082890.2.1	UniParc:UPI0002765BD2	SEG:seg	:

Description

No Description!

Coordinates

chr6:-:48522779..48529899

Molecular Weight (calculated)

30789.6 Da

IEP (calculated)

7.102

GRAVY (calculated)

-0.181

Length

276 amino acids

Sequence
(BLAST)

001: MASLKIKAVF CMQLLPLLIG AFSVIRINGS WDVEEGLLRR QTGHQREFDY FKLSLLWPGT ACRNTTKCCS SNACCRSNSP SIFTIHGLWA DYNDGTWPAC
101: CSGPQFDKEQ ISTLRKPMKK YWPSFSCKAT STCHHEKGSF WAHEVWEKHG TCSYPVVHDE YEYFLMTLNV YFKYNVTGIL FEAGYVPSNS EKYPLGGIIS
201: AIQNAFHATP ELICSGDAVE ELRICFYKDL QPRDCASGSI IKSGRVSSGS CPQYVSLPVV NGSGGLDNTT ADFLSE

Best Arabidopsis Sequence Match ( AT2G39780.1 )
(BLAST)

001: MASRLCLLLL VACIAGAFAG DVIELNRSQR EFDYFALSLQ WPGTYCRGTR HCCSKNACCR GSDAPTQFTI HGLWPDYNDG SWPSCCYRSD FKEKEISTLM
101: DGLEKYWPSL SCGSPSSCNG GKGSFWGHEW EKHGTCSSPV FHDEYNYFLT TLNLYLKHNV TDVLYQAGYV ASNSEKYPLG GIVTAIQNAF HITPEVVCKR
201: DAIDEIRICF YKDFKPRDCV GSQDLTSRKS CPKYVSLPEY TPLDGEAMVL KMPTEREAL

Arabidopsis Description

RNS2Ribonuclease 2 [Source:UniProtKB/Swiss-Prot;Acc:P42814]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.