Factsheet for VIT_00s1339g00010.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol, extracellular, nucleus
PProwler:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400071177	Potato	cytosol, nucleus, peroxisome	58.65	25.52
Solyc06g082890.2.1	Tomato	extracellular, plasma membrane	57.69	21.74
KRH06524	Soybean	extracellular	54.81	21.19
Solyc09g020110.2.1	Tomato	plastid	52.88	21.15
KRH47963	Soybean	nucleus	53.85	20.74
AT2G39780.1	Thale cress	extracellular	50.96	20.46
CDY60490	Canola	extracellular, plasma membrane, vacuole	48.08	19.53
Bra032671.1-P	Field mustard	extracellular	49.04	19.25
CDY39709	Canola	extracellular	49.04	19.25
GSMUA_Achr7P23750_001	Banana	mitochondrion	44.23	15.33
VIT_01s0010g01250.t01	Wine grape	cytosol, nucleus, plastid	19.23	15.04
OQU81225	Sorghum	cytosol	17.31	14.63
Os01t0897300-01	Rice	extracellular	36.54	13.67
TraesCS3A01G398200.1	Wheat	endoplasmic reticulum, extracellular, vacuole	34.62	12.72
TraesCS3D01G392200.1	Wheat	endoplasmic reticulum, extracellular, vacuole	34.62	12.72
KXG33898	Sorghum	extracellular, plasma membrane	36.54	12.46
TraesCS3B01G430200.1	Wheat	endoplasmic reticulum, extracellular, mitochondrion	33.65	12.37
HORVU3Hr1G089550.5	Barley	endoplasmic reticulum, extracellular, vacuole	33.65	12.37
OQU88033	Sorghum	endoplasmic reticulum, extracellular, vacuole	32.69	12.32
Os01t0897200-01	Rice	extracellular, vacuole	32.69	11.97
TraesCS3B01G430300.1	Wheat	unclear	31.73	11.83
TraesCS3D01G392300.1	Wheat	extracellular	31.73	11.74
TraesCS3A01G398300.1	Wheat	endoplasmic reticulum, extracellular	28.85	11.49
Zm00001d042511_P005	Maize	golgi, mitochondrion, plasma membrane	35.58	10.48
HORVU3Hr1G089580.5	Barley	cytosol, extracellular	30.77	10.42
VIT_01s0026g02520.t01	Wine grape	extracellular	22.12	10.18
Zm00001d042512_P006	Maize	endoplasmic reticulum, extracellular, vacuole	29.81	8.68
HORVU6Hr1G017960.3	Barley	plastid	0.96	0.57
VIT_01s0010g00450.t01	Wine grape	extracellular	0.0	0.0

Protein Annotations

Gene3D:3.90.730.10	MapMan:35.1	ProteinID:CBI35754	ProteinID:CBI35754.3	UniProt:D7TZ31	EMBL:FN596368
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518	GO:GO:0005488
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	GO:GO:0033897
GO:GO:0090502	InterPro:IPR036430	PFAM:PF00445	PANTHER:PTHR11240	PANTHER:PTHR11240:SF37	InterPro:RNase_T2-like
InterPro:RNase_T2-like_sf	SUPFAM:SSF55895	TIGR:TC62479	UniParc:UPI0001BE491B	ArrayExpress:VIT_00s1339g00010	EnsemblPlantsGene:VIT_00s1339g00010
EnsemblPlants:VIT_00s1339g00010.t01	unigene:Vvi.25414	SEG:seg	:	:	:

Description

No Description!

Coordinates

chrUn:-:38669765..38671819

Molecular Weight (calculated)

11292.3 Da

IEP (calculated)

4.732

GRAVY (calculated)

-0.088

Length

104 amino acids

Sequence
(BLAST)

001: RVLNEAGYVP SNSEKYPLGG IVSAIENAFH ATPSLACSNG AVKELYLCFN KDFKPRDCAV RSSLQSEIFS QSSCPTYVSL PAHVSLGLED DRTAVAWLPD
101: NEIL

Best Arabidopsis Sequence Match ( AT2G39780.2 )
(BLAST)

001: MASRLCLLLL VACIAGAFAG DVIELNRSQR EFDYFALSLQ WPGTYCRGTR HCCSKNACCR GSDAPTQFTI HGLWPDYNDG SWPSCCYRSD FKEKEISTLM
101: DGLEKYWPSL SCGSPSSCNG GKGSFWGHED VLYQAGYVAS NSEKYPLGGI VTAIQNAFHI TPEVVCKRDA IDEIRICFYK DFKPRDCVGS QDLTSRKSCP
201: KYVSLPEYTP LDGEAMVLKM PTEREAL

Arabidopsis Description

RNS2Ribonuclease 2 [Source:UniProtKB/Swiss-Prot;Acc:P42814]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.