Factsheet for TraesCS3A01G398300.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular

Predictor Summary:

extracellular 5
endoplasmic reticulum 5
vacuole 4
plasma membrane 4
golgi 4
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular
Any Predictor:	peroxisome, secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	peroxisome
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G430300.1	Wheat	unclear	96.55	90.32
TraesCS3D01G392300.1	Wheat	extracellular	95.4	88.61
HORVU3Hr1G089580.5	Barley	cytosol, extracellular	91.95	78.18
OQU88033	Sorghum	endoplasmic reticulum, extracellular, vacuole	73.56	69.57
HORVU6Hr1G017960.3	Barley	plastid	39.85	59.77
Os01t0897200-01	Rice	extracellular, vacuole	57.85	53.17
KRH47963	Soybean	nucleus	48.66	47.04
TraesCS3A01G398200.1	Wheat	endoplasmic reticulum, extracellular, vacuole	49.81	45.94
AT2G39780.1	Thale cress	extracellular	44.83	45.17
GSMUA_Achr7P23750_001	Banana	mitochondrion	51.72	45.0
KRH06524	Soybean	extracellular	45.98	44.61
CDY60490	Canola	extracellular, plasma membrane, vacuole	43.68	44.53
Bra032671.1-P	Field mustard	extracellular	43.68	43.02
CDY39709	Canola	extracellular	43.68	43.02
Solyc09g020110.2.1	Tomato	plastid	41.38	41.54
Solyc06g082890.2.1	Tomato	extracellular, plasma membrane	42.91	40.58
Zm00001d042512_P006	Maize	endoplasmic reticulum, extracellular, vacuole	51.72	37.82
TraesCS6A01G339600.1	Wheat	extracellular	28.74	32.89
TraesCS2A01G264000.1	Wheat	extracellular	28.74	32.61
PGSC0003DMT400071177	Potato	cytosol, nucleus, peroxisome	29.5	32.22
TraesCS2A01G157400.1	Wheat	extracellular	29.5	31.95
VIT_00s1339g00010.t01	Wine grape	cytosol	11.49	28.85
TraesCS2A01G157300.1	Wheat	extracellular	25.67	25.97
TraesCS1A01G152800.1	Wheat	extracellular	21.46	22.86
TraesCS1A01G152600.1	Wheat	unclear	18.01	18.65

Protein Annotations

Gene3D:3.90.730.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0004518	GO:GO:0005488	GO:GO:0016787	GO:GO:0033897	InterPro:IPR036430	PFAM:PF00445
ScanProsite:PS00530	ScanProsite:PS00531	PANTHER:PTHR11240	PANTHER:PTHR11240:SF37	InterPro:RNase_T2-like	InterPro:RNase_T2-like_sf
InterPro:RNase_T2_His_AS_1	InterPro:RNase_T2_His_AS_2	InterPro:Ribonuclease_T2_eukaryotic	SUPFAM:SSF55895	SignalP:SignalP-noTM	TMHMM:TMhelix
EnsemblPlantsGene:TraesCS3A01G398300	EnsemblPlants:TraesCS3A01G398300.1	TIGR:cd01061	SEG:seg	:	:

Description

No Description!

Coordinates

chr3A:+:645542849..645545608

Molecular Weight (calculated)

28842.4 Da

IEP (calculated)

7.571

GRAVY (calculated)

-0.126

Length

261 amino acids

Sequence
(BLAST)

001: MATATATATC LLAVWALVAA GLFGTGLARA SVAPAAVGKE QREFDYFALA LQWPGTICSS TRHCCAVNGC CRSEALHTFT IHGLWPDYDD GTWPSCCRHT
101: SFDMDKLTPL KPTLDKYWPS LYCSTSSTCF SGRGPFWAHE WEKHGTCSAP VVHEELQYFT TALDLYYKYN VTEMLATGDI LVSNGKEYAL SDVIDTIKHA
201: FGGSPQIICK KGSVEELRLC FTKDLKPRDC LTTSAMYKNL SKSKHCPKKI SLPTYDPIGK F

Best Arabidopsis Sequence Match ( AT2G39780.1 )
(BLAST)

001: MASRLCLLLL VACIAGAFAG DVIELNRSQR EFDYFALSLQ WPGTYCRGTR HCCSKNACCR GSDAPTQFTI HGLWPDYNDG SWPSCCYRSD FKEKEISTLM
101: DGLEKYWPSL SCGSPSSCNG GKGSFWGHEW EKHGTCSSPV FHDEYNYFLT TLNLYLKHNV TDVLYQAGYV ASNSEKYPLG GIVTAIQNAF HITPEVVCKR
201: DAIDEIRICF YKDFKPRDCV GSQDLTSRKS CPKYVSLPEY TPLDGEAMVL KMPTEREAL

Arabidopsis Description

RNS2Ribonuclease 2 [Source:UniProtKB/Swiss-Prot;Acc:P42814]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.